java.lang.RuntimeException: java.util.zip.DataFormatException: invalid distance too far back

sourceforge.net | 3 months ago
  1. 0

    SAM tools / Mailing Lists

    sourceforge.net | 3 months ago
    java.lang.RuntimeException: java.util.zip.DataFormatException: invalid distance too far back
  2. 0

    Gatk Error

    biostars.org | 3 months ago
    java.lang.RuntimeException: java.util.zip.DataFormatException: invalid stored block lengths
  3. 0

    What's wrong with this use of java Deflater/Inflater with a dictionary

    Stack Overflow | 2 years ago | Archie
    java.util.zip.DataFormatException: invalid distance too far back
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  5. 0

    java.util.zip.ZipException: invalid stored block lengths

    Oracle Community | 5 years ago | user10049207
    java.util.zip.DataFormatException: invalid distance too far back
  6. 0

    GitHub comment 576#211673393

    GitHub | 8 months ago | akiezun
    htsjdk.samtools.util.RuntimeIOException: java.util.zip.DataFormatException: invalid distance too far back

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    Root Cause Analysis

    1. java.util.zip.DataFormatException

      invalid distance too far back

      at java.util.zip.Inflater.inflateBytes()
    2. Java RT
      Inflater.inflate
      1. java.util.zip.Inflater.inflateBytes(Native Method)
      2. java.util.zip.Inflater.inflate(Inflater.java:255)
      2 frames
    3. picard
      BlockCompressedInputStream.read
      1. net.sf.samtools.util.BlockGunzipper.unzipBlock(BlockGunzipper.java:96)
      2. net.sf.samtools.util.BlockCompressedInputStream.inflateBlock(BlockCompressedInputStream.java:320)
      3. net.sf.samtools.util.BlockCompressedInputStream.readBlock(BlockCompressedInputStream.java:302)
      4. net.sf.samtools.util.BlockCompressedInputStream.available(BlockCompressedInputStream.java:106)
      5. net.sf.samtools.util.BlockCompressedInputStream.read(BlockCompressedInputStream.java:175)
      5 frames
    4. Java RT
      DataInputStream.read
      1. java.io.DataInputStream.read(DataInputStream.java:149)
      1 frame
    5. picard
      AddOrReplaceReadGroups.main
      1. net.sf.samtools.util.BinaryCodec.readBytesOrFewer(BinaryCodec.java:394)
      2. net.sf.samtools.util.BinaryCodec.readBytes(BinaryCodec.java:371)
      3. net.sf.samtools.util.BinaryCodec.readByteBuffer(BinaryCodec.java:480)
      4. net.sf.samtools.util.BinaryCodec.readInt(BinaryCodec.java:491)
      5. net.sf.samtools.BAMRecordCodec.decode(BAMRecordCodec.java:159)
      6. net.sf.samtools.BAMFileReader$BAMFileIterator.getNextRecord(BAMFileReader.java:486)
      7. net.sf.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:460)
      8. net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:450)
      9. net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:417)
      10. net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:629)
      11. net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:607)
      12. net.sf.picard.sam.AddOrReplaceReadGroups.doWork(AddOrReplaceReadGroups.java:91)
      13. net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:169)
      14. net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:119)
      15. net.sf.picard.sam.AddOrReplaceReadGroups.main(AddOrReplaceReadGroups.java:61)
      15 frames