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via sourceforge.net by Unknown author, 1 year ago
java.util.zip.DataFormatException: invalid distance too far back
via biostars.org by Unknown author, 1 year ago
java.util.zip.DataFormatException: invalid stored block lengths
java.lang.RuntimeException: java.util.zip.DataFormatException: invalid distance too far back	at net.sf.samtools.util.BlockGunzipper.unzipBlock(BlockGunzipper.java:112)	at net.sf.samtools.util.BlockCompressedInputStream.inflateBlock(BlockCompressedInputStream.java:320)	at net.sf.samtools.util.BlockCompressedInputStream.readBlock(BlockCompressedInputStream.java:302)	at net.sf.samtools.util.BlockCompressedInputStream.available(BlockCompressedInputStream.java:106)	at net.sf.samtools.util.BlockCompressedInputStream.read(BlockCompressedInputStream.java:175)	at java.io.DataInputStream.read(DataInputStream.java:149)	at net.sf.samtools.util.BinaryCodec.readBytesOrFewer(BinaryCodec.java:394)	at net.sf.samtools.util.BinaryCodec.readBytes(BinaryCodec.java:371)	at net.sf.samtools.util.BinaryCodec.readByteBuffer(BinaryCodec.java:480)	at net.sf.samtools.util.BinaryCodec.readInt(BinaryCodec.java:491)	at net.sf.samtools.BAMRecordCodec.decode(BAMRecordCodec.java:159)	at net.sf.samtools.BAMFileReader$BAMFileIterator.getNextRecord(BAMFileReader.java:486)	at net.sf.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:460)	at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:450)	at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:417)	at net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:629)	at net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:607)	at net.sf.picard.sam.AddOrReplaceReadGroups.doWork(AddOrReplaceReadGroups.java:91)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:169)	at net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:119)	at net.sf.picard.sam.AddOrReplaceReadGroups.main(AddOrReplaceReadGroups.java:61)