java.lang.ClassCastException: java.lang.Integer cannot be cast to scala.collection.IndexedSeq

Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Samebug tips

Do you know how to solve this issue? Write a tip to help other users and build your expert profile.

Solutions on the web

via GitHub by tpoterba
, 1 year ago
java.lang.Integer cannot be cast to scala.collection.IndexedSeq
java.lang.ClassCastException: java.lang.Integer cannot be cast to scala.collection.IndexedSeq
at org.broadinstitute.hail.expr.IndexOp$$anonfun$eval$217.apply(AST.scala:1780)
at org.broadinstitute.hail.expr.AST$$anonfun$evalCompose$2.apply(AST.scala:128)
at org.broadinstitute.hail.expr.Parser$$anonfun$5$$anonfun$apply$7.apply(Parser.scala:168)
at org.broadinstitute.hail.expr.Parser$$anonfun$5$$anonfun$apply$7.apply(Parser.scala:168)
at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2$$anonfun$apply$2.apply(AnnotateVariantsExpr.scala:71)
at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2$$anonfun$apply$2.apply(AnnotateVariantsExpr.scala:70)
at scala.collection.IndexedSeqOptimized$class.foldl(IndexedSeqOptimized.scala:51)
at scala.collection.IndexedSeqOptimized$class.foldLeft(IndexedSeqOptimized.scala:60)
at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2.apply(AnnotateVariantsExpr.scala:70)
at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2.apply(AnnotateVariantsExpr.scala:64)
at org.broadinstitute.hail.variant.VariantSampleMatrix$$anonfun$mapAnnotations$1.apply(VariantSampleMatrix.scala:399)
at org.broadinstitute.hail.variant.VariantSampleMatrix$$anonfun$mapAnnotations$1.apply(VariantSampleMatrix.scala:399)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
at org.apache.spark.storage.MemoryStore.unrollSafely(MemoryStore.scala:285)
at org.apache.spark.CacheManager.putInBlockManager(CacheManager.scala:171)
at org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:78)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:268)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Users with the same issue

You are the first who have seen this exception. Write a tip to help other users and build your expert profile.

Write tip

Know the solutions? Share your knowledge to help other developers to debug faster.