com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException Serialization trace: underlying (scala.collection.convert.Wrappers$JListWrapper) values (org.apache.spark.sql.catalyst.expressions.GenericRow)

github.com | 3 months ago
  1. 0

    eco-release-metadata/RELEASENOTES.1.2.0.md at master · aw-was-here/eco-release-metadata · GitHub

    github.com | 3 months ago
    com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException Serialization trace: underlying (scala.collection.convert.Wrappers$JListWrapper) values (org.apache.spark.sql.catalyst.expressions.GenericRow)
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    Issues about adam2vcf

    Google Groups | 12 months ago | 于洋
    com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException Serialization trace: alleles (htsjdk.variant.variantcontext.FastGenotype) genotypes (htsjdk.variant.variantcontext.VariantContext) vc (org.seqdoop.hadoop_bam.VariantContextWritable)
  3. 0

    adam2vcf fails with -coalesce

    GitHub | 1 year ago | antonstamov
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 41.0 failed 1 times, most recent failure: Lost task 3.0 in stage 41.0 (TID 333, localhost): com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException Serialization trace: alleles (htsjdk.variant.variantcontext.FastGenotype) genotypes (htsjdk.variant.variantcontext.VariantContext) vc (org.seqdoop.hadoop_bam.VariantContextWritable)
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    Android: Saving Map State in Google map

    Stack Overflow | 11 months ago | Junie Negentien
    java.lang.RuntimeException: Unable to resume activity {com.ourThesis.junieNegentien2015/com.ourThesis.junieNegentien2015.MainActivity}: java.lang.NullPointerException

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    Root Cause Analysis

    1. java.lang.NullPointerException

      No message provided

      at scala.collection.convert.Wrappers$MutableBufferWrapper.add()
    2. Scala
      Wrappers$MutableBufferWrapper.add
      1. scala.collection.convert.Wrappers$MutableBufferWrapper.add(Wrappers.scala:80)
      1 frame
    3. Kryo
      Kryo.readClassAndObject
      1. com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:109)
      2. com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:18)
      3. com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648)
      4. com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605)
      5. com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221)
      6. com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729)
      7. com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338)
      8. com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293)
      9. com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648)
      10. com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605)
      11. com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221)
      12. com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729)
      13. com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338)
      14. com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293)
      15. com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729)
      15 frames
    4. Spark
      TaskResultGetter$$anon$2.run
      1. org.apache.spark.serializer.KryoSerializerInstance.deserialize(KryoSerializer.scala:162)
      2. org.apache.spark.scheduler.DirectTaskResult.value(TaskResult.scala:79)
      3. org.apache.spark.scheduler.TaskSetManager.handleSuccessfulTask(TaskSetManager.scala:514)
      4. org.apache.spark.scheduler.TaskSchedulerImpl.handleSuccessfulTask(TaskSchedulerImpl.scala:355)
      5. org.apache.spark.scheduler.TaskResultGetter$$anon$2$$anonfun$run$1.apply$mcV$sp(TaskResultGetter.scala:68)
      6. org.apache.spark.scheduler.TaskResultGetter$$anon$2$$anonfun$run$1.apply(TaskResultGetter.scala:47)
      7. org.apache.spark.scheduler.TaskResultGetter$$anon$2$$anonfun$run$1.apply(TaskResultGetter.scala:47)
      8. org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1276)
      9. org.apache.spark.scheduler.TaskResultGetter$$anon$2.run(TaskResultGetter.scala:46)
      9 frames
    5. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
      3. java.lang.Thread.run(Thread.java:701)
      3 frames