java.lang.ClassCastException

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  • GitHub comment 660#242218633
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  • GitHub comment 660#241800222
    via GitHub by tpoterba
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    • java.lang.ClassCastException: java.lang.Integer cannot be cast to scala.collection.IndexedSeq at org.broadinstitute.hail.expr.IndexOp$$anonfun$eval$224.apply(AST.scala:1894) at org.broadinstitute.hail.expr.AST$$anonfun$evalCompose$2.apply(AST.scala:129) at org.broadinstitute.hail.expr.Parser$$anonfun$5$$anonfun$apply$7.apply(Parser.scala:168) at org.broadinstitute.hail.expr.Parser$$anonfun$5$$anonfun$apply$7.apply(Parser.scala:168) at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2$$anonfun$apply$2.apply(AnnotateVariantsExpr.scala:71) at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2$$anonfun$apply$2.apply(AnnotateVariantsExpr.scala:70) at scala.collection.IndexedSeqOptimized$class.foldl(IndexedSeqOptimized.scala:51) at scala.collection.IndexedSeqOptimized$class.foldLeft(IndexedSeqOptimized.scala:60) at scala.collection.mutable.ArrayOps$ofRef.foldLeft(ArrayOps.scala:108) at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2.apply(AnnotateVariantsExpr.scala:70) at org.broadinstitute.hail.driver.AnnotateVariantsExpr$$anonfun$2.apply(AnnotateVariantsExpr.scala:64) at org.broadinstitute.hail.variant.VariantSampleMatrix$$anonfun$25.apply(VariantSampleMatrix.scala:423) at org.broadinstitute.hail.variant.VariantSampleMatrix$$anonfun$25.apply(VariantSampleMatrix.scala:423) at org.broadinstitute.hail.RichPairRDD$$anonfun$mapValuesWithKey$extension$1$$anonfun$apply$5.apply(Utils.scala:459) at org.broadinstitute.hail.RichPairRDD$$anonfun$mapValuesWithKey$extension$1$$anonfun$apply$5.apply(Utils.scala:459) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at org.apache.spark.util.Utils$.getIteratorSize(Utils.scala:1555) at org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1125) at org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1125) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1850) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1850) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66) at org.apache.spark.scheduler.Task.run(Task.scala:88) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)
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