dr.xml.XMLParseException: Error parsing '<newick>' element with id, 'null': error parsing tree in newick element - Missing closing ')' in tree

Google Groups | Julio Diaz Caballero | 6 months ago
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  1. 0

    Issues using user specified tree

    Google Groups | 6 months ago | Julio Diaz Caballero
    dr.xml.XMLParseException: Error parsing '<newick>' element with id, 'null': error parsing tree in newick element - Missing closing ')' in tree
  2. 0

    "Could not find a proper state to initialise" error

    Google Groups | 3 years ago | Norm
    dr.xml.XMLParseException: Error parsing '<newick>' element with id, 'null': error parsing tree in newick element - Missing closing ')' in tree
  3. 0

    BEAST v1.8.3 released

    Google Groups | 1 year ago | Andrew Rambaut
    dr.xml.XMLParseException: The '<gammaDistributionModel>' element with id, 'null', is incorrectly constructed. The following was expected: Exactly one ELEMENT of name shape REQUIRED containing Exactly one ELEMENT of type Parameter REQUIRED
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  5. 0

    Markov Jump on discrete state transitions

    Google Groups | 1 year ago | Antonello Di Nardo
    dr.xml.XMLParseException: Error parsing '<logTree>' element with id, 'treeFileLog': Trait named, location.count, not found for MarkovJumpsBeagleTreeLikelihood(treeLikelihood[location.treeLikelihood])
  6. 0

    An error of Markov Jump model

    Google Groups | 9 months ago | yuhan
    dr.xml.XMLParseException: Error parsing '<logTree>' element with id, 'treeFileLog': Trait named, 1.count, not found for MarkovJumpsBeagleTreeLikelihood(treeLikelihood[1.treeLikelihood])

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    Root Cause Analysis

    1. dr.xml.XMLParseException

      Error parsing '<newick>' element with id, 'null': error parsing tree in newick element - Missing closing ')' in tree

      at dr.xml.AbstractXMLObjectParser.parseXMLObject()
    2. dr.xml
      XMLParser.parse
      1. dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
      2. dr.xml.XMLParser.convert(Unknown Source)
      3. dr.xml.XMLParser.convert(Unknown Source)
      4. dr.xml.XMLParser.convert(Unknown Source)
      5. dr.xml.XMLParser.parse(Unknown Source)
      5 frames
    3. dr.app.beast
      BeastMain.main
      1. dr.app.beast.BeastMain.<init>(Unknown Source)
      2. dr.app.beast.BeastMain.main(Unknown Source)
      2 frames