java.lang.ArrayIndexOutOfBoundsException: 37450

Google Groups | Malcolm Cook | 4 months ago
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    BUG: using relative paths to indexed fasta file as genome fails to load correctly

    Google Groups | 4 months ago | Malcolm Cook
    java.lang.ArrayIndexOutOfBoundsException: 37450
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    Semantive Wave Form Library

    Stack Overflow | 2 months ago | user2987773
    java.lang.ArrayIndexOutOfBoundsException: length=65593; index=65593
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    Stack Overflow | 2 months ago | surya
    java.lang.ArrayIndexOutOfBoundsException: 13
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    GitHub comment 18#255512675

    GitHub | 2 months ago | Megachin502
    org.bukkit.event.EventException
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    GitHub comment 7#256263179

    GitHub | 2 months ago | douya40
    java.lang.ArrayIndexOutOfBoundsException: length=40; index=-1

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    Root Cause Analysis

    1. java.lang.ArrayIndexOutOfBoundsException

      37450

      at htsjdk.tribble.readers.TabixReader.reg2bins()
    2. HTS JDK
      TabixFeatureReader.query
      1. htsjdk.tribble.readers.TabixReader.reg2bins(TabixReader.java:153)
      2. htsjdk.tribble.readers.TabixReader.query(TabixReader.java:417)
      3. htsjdk.tribble.TabixFeatureReader.query(TabixFeatureReader.java:120)
      3 frames
    3. org.broad.igv
      GlobalKeyDispatcher.dispatchKeyEvent
      1. org.broad.igv.feature.tribble.CachingFeatureReader.queryRaw(CachingFeatureReader.java:73)
      2. org.broad.igv.feature.AbstractCacher.loadTiles(AbstractCacher.java:198)
      3. org.broad.igv.feature.AbstractCacher.getBins(AbstractCacher.java:161)
      4. org.broad.igv.feature.AbstractCacher.queryCached(AbstractCacher.java:102)
      5. org.broad.igv.feature.tribble.CachingFeatureReader.query(CachingFeatureReader.java:104)
      6. org.broad.igv.track.TribbleFeatureSource$IndexedFeatureSource.getFeatures(TribbleFeatureSource.java:192)
      7. org.broad.igv.track.FeatureTrackUtils.nextFeature(FeatureTrackUtils.java:75)
      8. org.broad.igv.track.FeatureTrack.nextFeature(FeatureTrack.java:1004)
      9. org.broad.igv.ui.event.GlobalKeyDispatcher.nextFeature(GlobalKeyDispatcher.java:401)
      10. org.broad.igv.ui.event.GlobalKeyDispatcher.access$000(GlobalKeyDispatcher.java:61)
      11. org.broad.igv.ui.event.GlobalKeyDispatcher$1.actionPerformed(GlobalKeyDispatcher.java:116)
      12. org.broad.igv.ui.event.GlobalKeyDispatcher$EnableWrappedAction.actionPerformed(GlobalKeyDispatcher.java:446)
      13. org.broad.igv.ui.event.GlobalKeyDispatcher.dispatchKeyEvent(GlobalKeyDispatcher.java:94)
      13 frames
    4. Java RT
      EventDispatchThread.run
      1. java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(DefaultKeyboardFocusManager.java:1068)
      2. java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:945)
      3. java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:771)
      4. java.awt.Component.dispatchEventImpl(Component.java:4760)
      5. java.awt.Container.dispatchEventImpl(Container.java:2294)
      6. java.awt.Window.dispatchEventImpl(Window.java:2746)
      7. java.awt.Component.dispatchEvent(Component.java:4711)
      8. java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
      9. java.awt.EventQueue.access$500(EventQueue.java:97)
      10. java.awt.EventQueue$3.run(EventQueue.java:709)
      11. java.awt.EventQueue$3.run(EventQueue.java:703)
      12. java.security.AccessController.doPrivileged(Native Method)
      13. java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
      14. java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:86)
      15. java.awt.EventQueue$4.run(EventQueue.java:731)
      16. java.awt.EventQueue$4.run(EventQueue.java:729)
      17. java.security.AccessController.doPrivileged(Native Method)
      18. java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
      19. java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
      20. java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
      21. java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
      22. java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
      23. java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
      24. java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
      25. java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
      25 frames