java.lang.RuntimeException: JobStoreResultSimpletonEntry(metrics,"gs://broad-gotc-prod-cromwell-execution/PairedEndSingleSampleWorkflow/5b7f21d8-0a96-4bbe-a96b-aa68c0454fd7/call-CollectQualityYieldMetrics/shard-8/HV2J2CCXX.8.Pond-555028.unmapped.quality_yield_metrics",File,892420,Some(287367)): unrecognized WDL type: File

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via GitHub by mcovarr
, 1 year ago
JobStoreResultSimpletonEntry(metrics,"gs://broad-gotc-prod-cromwell-execution/PairedEndSingleSampleWorkflow/5b7f21d8-0a96-4bbe-a96b-aa68c0454fd7/call-CollectQualityYieldMetrics/shard-8/HV2J2CCXX.8.Pond-555028.unmapped.quality_yield_metrics",File,892420,Some(287367)): unrecognized WDL type: File
java.lang.RuntimeException: JobStoreResultSimpletonEntry(metrics,"gs://broad-gotc-prod-cromwell-execution/PairedEndSingleSampleWorkflow/5b7f21d8-0a96-4bbe-a96b-aa68c0454fd7/call-CollectQualityYieldMetrics/shard-8/HV2J2CCXX.8.Pond-555028.unmapped.quality_yield_metrics",File,892420,Some(287367)): unrecognized WDL type: File
at cromwell.jobstore.SqlJobStore.cromwell$jobstore$SqlJobStore$$toSimpleton(SqlJobStore.scala:59)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1$$anonfun$apply$5$$anonfun$3.apply(SqlJobStore.scala:69)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1$$anonfun$apply$5$$anonfun$3.apply(SqlJobStore.scala:69)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:245)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:245)
at scala.collection.Iterator$class.foreach(Iterator.scala:742)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1194)
at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:245)
at scala.collection.AbstractTraversable.map(Traversable.scala:104)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1$$anonfun$apply$5.apply(SqlJobStore.scala:69)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1$$anonfun$apply$5.apply(SqlJobStore.scala:66)
at scala.Option.map(Option.scala:146)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1.apply(SqlJobStore.scala:66)
at cromwell.jobstore.SqlJobStore$$anonfun$readJobResult$1.apply(SqlJobStore.scala:66)
at scala.util.Success$$anonfun$map$1.apply(Try.scala:237)
at scala.util.Try$.apply(Try.scala:192)
at scala.util.Success.map(Try.scala:237)
at scala.concurrent.Future$$anonfun$map$1.apply(Future.scala:235)
at scala.concurrent.Future$$anonfun$map$1.apply(Future.scala:235)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch$$anonfun$run$1.apply$mcV$sp(BatchingExecutor.scala:91)
at akka.dispatch.BatchingExecutor$BlockableBatch$$anonfun$run$1.apply(BatchingExecutor.scala:91)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:90)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

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