java.lang.IllegalArgumentException: Error writing VCF file: /home/Spring_2015/Genomic_Selection/TASSEL_Bowtie2_GBS_GS1_GS_2/vcf/test.vcf: null

Google Groups | Unknown author | 2 years ago
  1. 0

    Problem exporting HDF5 file to VCF in 5.2.11

    Google Groups | 2 years ago | Unknown author
    java.lang.IllegalArgumentException: Error writing VCF file: /home/Spring_2015/Genomic_Selection/TASSEL_Bowtie2_GBS_GS1_GS_2/vcf/test.vcf: null
  2. 0

    Error writing VCF file - ProductionSNPCallerPluginV2

    Google Groups | 6 months ago | Elad Oren
    java.lang.IllegalArgumentException: Error writing VCF file: C:\Users\aro\Desktop\Elad\Mel180_GBS\Mel180_GBS_3.vcf: 1
  3. 0

    GitHub comment 87#48118575

    GitHub | 2 years ago | davidfraser
    java.lang.IllegalArgumentException: Illegal character in path at index 28: /dav/acnt@server.com/Emailed Contacts/e5d2662d-ea83-4bc0-80f5-8ed6a482c359:24778.vcf
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  5. 0

    problem loading VCF when running adam-submit

    Google Groups | 2 years ago | sjo...@thehyve.nl
    java.lang.IllegalArgumentException: unknown VCF format, cannot create RecordReader: file:/mnt/28genome_SNP.vcf org.seqdoop.hadoop_bam.VCFInputFormat.createRecordReader(VCFInputFormat.java:178) org.apache.spark.rdd.NewHadoopRDD$$anon$1.<init>(NewHadoopRDD.scala:115) org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:103) org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:65) org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262) org.apache.spark.rdd.RDD.iterator(RDD.scala:229) org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:62) org.apache.spark.scheduler.Task.run(Task.scala:54) org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:177) java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) java.lang.Thread.run(Thread.java:745) Driver stacktrace:
  6. 0

    GitHub comment 87#48118575

    GitHub | 2 years ago | davidfraser
    java.lang.IllegalArgumentException: Illegal character in path at index 28: /dav/acnt@server.com/Emailed Contacts/e5d2662d-ea83-4bc0-80f5-8ed6a482c359:24778.vcf

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    Root Cause Analysis

    1. java.lang.IllegalArgumentException

      Error writing VCF file: /home/Spring_2015/Genomic_Selection/TASSEL_Bowtie2_GBS_GS1_GS_2/vcf/test.vcf: null

      at net.maizegenetics.dna.snp.ExportUtils.writeToVCF()
    2. net.maizegenetics.dna
      ExportUtils.writeToVCF
      1. net.maizegenetics.dna.snp.ExportUtils.writeToVCF(ExportUtils.java:370)
      1 frame
    3. net.maizegenetics.analysis
      ExportPlugin.performFunction
      1. net.maizegenetics.analysis.data.ExportPlugin.performFunctionForAlignment(ExportPlugin.java:339)
      2. net.maizegenetics.analysis.data.ExportPlugin.performFunction(ExportPlugin.java:87)
      2 frames
    4. net.maizegenetics.plugindef
      ThreadedPluginListener.run
      1. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1481)
      2. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)
      2 frames