java.lang.RuntimeException: java.net.URISyntaxException:Expected scheme-specific part at index 2: C:

Stack Overflow | M.Prabhu | 3 months ago
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    Load data Query hive using file path in windows

    Stack Overflow | 3 months ago | M.Prabhu
    java.lang.RuntimeException: java.net.URISyntaxException:Expected scheme-specific part at index 2: C:
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    Query with outer join does not validate

    GitHub | 2 years ago | julie-sullivan
    java.lang.RuntimeException: Template query org.intermine.api.template.ApiTemplate{ name: Wild_Type_Exp_Short_Return, title: Wild-type Expression (with four result columns), comment: , description: Default query returns expression in wild-type backgrounds in standard or control environments. To search for expression of a specific gene, type the symbol (or part of the symbol plus wildcards, e.g. *fgf8*) in the "Gene > Symbol" box. To look for expression in groups of genes, make a list of the genes and use the checkbox to constrain the query to your custom list. To find expression in a particualr anatomical structure, enter it in the "ZFA Term > Name" box. To find subcellular expression, use the "Ontology Term > Name" box. , PathQuery( view: [Expression.gene.symbol, Expression.startStage.name, Expression.endStage.name, Expression.anatomy.name], orderBy: [Expression.gene.symbol ASC], constraints: {Expression.genotype.isWildType = true=B, Expression.expressionFound = true=C, Expression.gene.symbol = *=D, Expression.anatomy.name = *=E, Expression.environment.primaryIdentifier = ZDB-EXP-041102-1=G, Expression.environment.primaryIdentifier = ZDB-EXP-070511-5=A, Expression.subterm.name = *=F}, logic: B and C and D and E and (G or A) and F, outerJoinStatus: {Expression.subterm=OUTER}, descriptions: {}, description: Default query returns expression in wild-type backgrounds in standard or control environments. To search for expression of a specific gene, type the symbol (or part of the symbol plus wildcards, e.g. *fgf8*) in the "Gene > Symbol" box. To look for expression in groups of genes, make a list of the genes and use the checkbox to constrain the query to your custom list. To find expression in a particualr anatomical structure, enter it in the "ZFA Term > Name" box. To find subcellular expression, use the "Ontology Term > Name" box. )} does not validate: [Outer join status path Expression.subterm is not relevant to the query]

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    Root Cause Analysis

    1. java.lang.RuntimeException

      java.net.URISyntaxException:Expected scheme-specific part at index 2: C:

      at java.net.URI$Parser.fail()
    2. Java RT
      URI.<init>
      1. java.net.URI$Parser.fail(URI.java:2829)
      2. java.net.URI$Parser.failExpecting(URI.java:2835)
      3. java.net.URI$Parser.parse(URI.java:3038)
      4. java.net.URI.<init>(URI.java:753)
      4 frames