java.io.FileNotFoundException

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  • File _rgdict.avro does not exist
    via GitHub by ooliynyk
    ,
  • Hortonworks » All Replies
    via by Unknown author,
  • Issue with hbase
    via by Irwan Hadi,
    • java.io.FileNotFoundException: File file:/tmp/a7.adam/_rgdict.avro does not exist at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:534) at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:747) at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:524) at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:409) at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.<init>(ChecksumFileSystem.java:140) at org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:341) at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:766) at org.bdgenomics.adam.rdd.ADAMContext.loadAvro(ADAMContext.scala:442) at org.bdgenomics.adam.rdd.ADAMContext.loadAvroReadGroupMetadata(ADAMContext.scala:160) at org.bdgenomics.adam.rdd.ADAMContext.loadParquetAlignments(ADAMContext.scala:520) at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:1023) at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:1002) at scala.Option.fold(Option.scala:157) at org.apache.spark.rdd.Timer.time(Timer.scala:48) at org.bdgenomics.adam.rdd.ADAMContext.loadAlignments(ADAMContext.scala:1000) at org.bdgenomics.adam.cli.CountReadKmers.run(CountReadKmers.scala:63) at org.bdgenomics.utils.cli.BDGSparkCommand$class.run(BDGCommand.scala:55) at org.bdgenomics.adam.cli.CountReadKmers.run(CountReadKmers.scala:54) at org.bdgenomics.adam.cli.ADAMMain.apply(ADAMMain.scala:132) at org.bdgenomics.adam.cli.ADAMMain$.main(ADAMMain.scala:72) at org.bdgenomics.adam.cli.ADAMMain.main(ADAMMain.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:674) at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180) at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:120) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)

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