java.io.FileNotFoundException: File file:/tmp/a7.adam/_rgdict.avro does not exist

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via GitHub by ooliynyk
, 1 year ago
File file:/tmp/a7.adam/_rgdict.avro does not exist
via rssing.com by Unknown author, 2 years ago
File /user/root/vsconfig.properties does not exist
via techidiocy.com by Unknown author, 10 months ago
via Google Groups by vinayak sudheer, 2 days ago
File /druid/segments/hana_oracle_druid_test_adk_10/20170801T000000.000Z_20170901T000000.000Z/2017-11-17T07_40_51.759Z/0/index.zip does not exist
via GitHub by jpdna
, 1 year ago
File try2.bam_head does not exist
via Stack Overflow by Shankar
, 10 months ago
File file:/shared/sample1.csv does not exist
java.io.FileNotFoundException: File file:/tmp/a7.adam/_rgdict.avro does not exist
at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:534)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:747)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:524)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:409)
at org.apache.hadoop.fs.ChecksumFileSystem$ChecksumFSInputChecker.(ChecksumFileSystem.java:140)
at org.apache.hadoop.fs.ChecksumFileSystem.open(ChecksumFileSystem.java:341)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:766)
at org.bdgenomics.adam.rdd.ADAMContext.loadAvro(ADAMContext.scala:442)
at org.bdgenomics.adam.rdd.ADAMContext.loadAvroReadGroupMetadata(ADAMContext.scala:160)
at org.bdgenomics.adam.rdd.ADAMContext.loadParquetAlignments(ADAMContext.scala:520)
at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:1023)
at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:1002)
at scala.Option.fold(Option.scala:157)
at org.bdgenomics.adam.rdd.ADAMContext.loadAlignments(ADAMContext.scala:1000)
at org.bdgenomics.adam.cli.CountReadKmers.run(CountReadKmers.scala:63)
at org.bdgenomics.utils.cli.BDGSparkCommand$class.run(BDGCommand.scala:55)
at org.bdgenomics.adam.cli.CountReadKmers.run(CountReadKmers.scala:54)
at org.bdgenomics.adam.cli.ADAMMain.apply(ADAMMain.scala:132)
at org.bdgenomics.adam.cli.ADAMMain$.main(ADAMMain.scala:72)
at org.bdgenomics.adam.cli.ADAMMain.main(ADAMMain.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:674)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:120)

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