org.apache.spark.SparkException: Job aborted due to stage failure: Task 2 in stage 0.0 failed 4 times, most recent failure: Lost task 2.3 in stage 0.0 (TID 10, cluster.bioinfo.capitalbiotech.com): java.io.IOException: Function not implemented

GitHub | car2008 | 6 months ago
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    GitHub comment 197#244865292

    GitHub | 6 months ago | car2008
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 2 in stage 0.0 failed 4 times, most recent failure: Lost task 2.3 in stage 0.0 (TID 10, cluster.bioinfo.capitalbiotech.com): java.io.IOException: Function not implemented

    Root Cause Analysis

    1. org.apache.spark.SparkException

      Job aborted due to stage failure: Task 2 in stage 0.0 failed 4 times, most recent failure: Lost task 2.3 in stage 0.0 (TID 10, cluster.bioinfo.capitalbiotech.com): java.io.IOException: Function not implemented

      at sun.nio.ch.FileDispatcherImpl.lock0()
    2. Java RT
      FileChannel.lock
      1. sun.nio.ch.FileDispatcherImpl.lock0(Native Method)
      2. sun.nio.ch.FileDispatcherImpl.lock(FileDispatcherImpl.java:90)
      3. sun.nio.ch.FileChannelImpl.lock(FileChannelImpl.java:1072)
      4. java.nio.channels.FileChannel.lock(FileChannel.java:1053)
      4 frames
    3. Spark
      Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply
      1. org.apache.spark.util.Utils$.fetchFile(Utils.scala:377)
      2. org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:405)
      3. org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$updateDependencies$5.apply(Executor.scala:397)
      3 frames
    4. Scala
      TraversableLike$WithFilter.foreach
      1. scala.collection.TraversableLike$WithFilter$$anonfun$foreach$1.apply(TraversableLike.scala:772)
      2. scala.collection.mutable.HashMap$$anonfun$foreach$1.apply(HashMap.scala:98)
      3. scala.collection.mutable.HashMap$$anonfun$foreach$1.apply(HashMap.scala:98)
      4. scala.collection.mutable.HashTable$class.foreachEntry(HashTable.scala:226)
      5. scala.collection.mutable.HashMap.foreachEntry(HashMap.scala:39)
      6. scala.collection.mutable.HashMap.foreach(HashMap.scala:98)
      7. scala.collection.TraversableLike$WithFilter.foreach(TraversableLike.scala:771)
      7 frames
    5. Spark
      Executor$TaskRunner.run
      1. org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$updateDependencies(Executor.scala:397)
      2. org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:193)
      2 frames
    6. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames