java.util.regex.PatternSyntaxException

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  • GitHub comment 219#245128777
    via GitHub by mes5k
    ,
    • java.util.regex.PatternSyntaxException: Invalid range near index 172 /bioinformatics/internal_projects/genome_editing/archetype_dump/PUBLIC/Microbial/Viruses/ssDNA_viruses/Geminiviridae/Begomovirus/Bean_golden_yellow_mosaic_virus-[Puerto_Rico-Japan]/D00201.1/D00201.1.annotations.json.gz ^ at sun.nio.fs.Globs.toRegexPattern(Globs.java:135) at sun.nio.fs.Globs.toUnixRegexPattern(Globs.java:211) at sun.nio.fs.UnixFileSystem.getPathMatcher(UnixFileSystem.java:294) at nextflow.file.FileHelper.getPathMatcherFor(FileHelper.groovy:696) at nextflow.file.FileHelper.visitFiles(FileHelper.groovy:734) at nextflow.file.FileHelper$visitFiles$5.call(Unknown Source) at nextflow.Nextflow.fileNamePattern(Nextflow.groovy:107) at sun.reflect.GeneratedMethodAccessor23.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:93) at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite$StaticMetaMethodSiteNoUnwrapNoCoerce.invoke(StaticMetaMethodSite.java:151) at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.callStatic(StaticMetaMethodSite.java:102) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:222) at nextflow.Nextflow.file(Nextflow.groovy:133) at nextflow.Nextflow.file(Nextflow.groovy) at nextflow.Nextflow$file.callStatic(Unknown Source) at _nf_script_7b96e2d6$_run_closure3.doCall(_nf_script_7b96e2d6:21)
    No Bugmate found.