java.util.regex.PatternSyntaxException: Invalid range near index 172 /bioinformatics/internal_projects/genome_editing/archetype_dump/PUBLIC/Microbial/Viruses/ssDNA_viruses/Geminiviridae/Begomovirus/Bean_golden_yellow_mosaic_virus-[Puerto_Rico-Japan]/D00201.1/D00201.1.annotations.json.gz ^

GitHub | mes5k | 3 months ago
  1. 0

    GitHub comment 219#245128777

    GitHub | 3 months ago | mes5k
    java.util.regex.PatternSyntaxException: Invalid range near index 172 /bioinformatics/internal_projects/genome_editing/archetype_dump/PUBLIC/Microbial/Viruses/ssDNA_viruses/Geminiviridae/Begomovirus/Bean_golden_yellow_mosaic_virus-[Puerto_Rico-Japan]/D00201.1/D00201.1.annotations.json.gz ^
  2. 0

    Does -* have any special meaning in regular expression?

    Stack Overflow | 2 years ago | Destructor
    java.util.regex.PatternSyntaxException: Illegal character range near index 3 [+-*/] ^
  3. 0

    Report

    GitHub | 1 year ago | jsql-robot
    java.util.regex.PatternSyntaxException: Illegal repetition range near index 10 SQLi(.{1,0}) ^
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  5. 0

    Report

    GitHub | 1 year ago | jsql-robot
    java.util.regex.PatternSyntaxException: Illegal repetition range near index 10 SQLi(.{1,0}) ^
  6. 0

    Report

    GitHub | 1 year ago | jsql-robot
    java.util.regex.PatternSyntaxException: Illegal repetition range near index 10 SQLi(.{1,0}) ^

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    Root Cause Analysis

    1. java.util.regex.PatternSyntaxException

      Invalid range near index 172 /bioinformatics/internal_projects/genome_editing/archetype_dump/PUBLIC/Microbial/Viruses/ssDNA_viruses/Geminiviridae/Begomovirus/Bean_golden_yellow_mosaic_virus-[Puerto_Rico-Japan]/D00201.1/D00201.1.annotations.json.gz ^

      at sun.nio.fs.Globs.toRegexPattern()
    2. Java RT
      UnixFileSystem.getPathMatcher
      1. sun.nio.fs.Globs.toRegexPattern(Globs.java:135)
      2. sun.nio.fs.Globs.toUnixRegexPattern(Globs.java:211)
      3. sun.nio.fs.UnixFileSystem.getPathMatcher(UnixFileSystem.java:294)
      3 frames
    3. nextflow.file
      FileHelper$visitFiles$5.call
      1. nextflow.file.FileHelper.getPathMatcherFor(FileHelper.groovy:696)
      2. nextflow.file.FileHelper.visitFiles(FileHelper.groovy:734)
      3. nextflow.file.FileHelper$visitFiles$5.call(Unknown Source)
      3 frames
    4. nextflow
      Nextflow.fileNamePattern
      1. nextflow.Nextflow.fileNamePattern(Nextflow.groovy:107)
      1 frame
    5. Java RT
      Method.invoke
      1. sun.reflect.GeneratedMethodAccessor23.invoke(Unknown Source)
      2. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      3. java.lang.reflect.Method.invoke(Method.java:498)
      3 frames
    6. Groovy
      AbstractCallSite.callStatic
      1. org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:93)
      2. org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite$StaticMetaMethodSiteNoUnwrapNoCoerce.invoke(StaticMetaMethodSite.java:151)
      3. org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.callStatic(StaticMetaMethodSite.java:102)
      4. org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:222)
      4 frames
    7. nextflow
      Nextflow$file.callStatic
      1. nextflow.Nextflow.file(Nextflow.groovy:133)
      2. nextflow.Nextflow.file(Nextflow.groovy)
      3. nextflow.Nextflow$file.callStatic(Unknown Source)
      3 frames
    8. Unknown
      _nf_script_7b96e2d6$_run_closure3.doCall
      1. _nf_script_7b96e2d6$_run_closure3.doCall(_nf_script_7b96e2d6:21)
      1 frame