htsjdk.samtools.util.RuntimeIOException: java.io.IOException: No space left on device

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via broadinstitute.org by Unknown author, 1 year ago
java.io.IOException: No space left on device
via broadinstitute.org by Unknown author, 9 months ago
java.io.IOException: No space left on device
via broadinstitute.org by Unknown author, 1 year ago
java.io.IOException: No space left on device
via GitHub by sooheelee
, 2 years ago
java.io.IOException: No space left on device
java.io.IOException: No space left on device
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:318)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:126)
at org.xerial.snappy.SnappyOutputStream.dump(SnappyOutputStream.java:127)
at org.xerial.snappy.SnappyOutputStream.flush(SnappyOutputStream.java:100)
at org.xerial.snappy.SnappyOutputStream.close(SnappyOutputStream.java:137)
at htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:236)
at htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:165)
at picard.sam.markduplicates.MarkDuplicates.buildSortedReadEndLists(MarkDuplicates.java:281)
at picard.sam.markduplicates.MarkDuplicates.doWork(MarkDuplicates.java:114)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:206)
at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95)
at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)

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