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via seqanswers.com by Unknown author, 1 year ago
Error creating temporary ReadEnds file
java.io.FileNotFoundException: /media/1B3B8E0F52CC3359/mRNAsnp/DREM.4603601404094682558.tmp/32279.read_ends (Too many open files)	at java.io.FileOutputStream.open(Native Method)	at java.io.FileOutputStream.(FileOutputStream.java:209)	at java.io.FileOutputStream.(FileOutputStream.java:160)	at net.sf.picard.sam.DiskReadEndsMap.getOutputStreamForSequence(DiskReadEndsMap.java:170)	at net.sf.picard.sam.DiskReadEndsMap.put(DiskReadEndsMap.java:147)	at net.sf.picard.sam.MarkDuplicates.buildSortedReadEndLists(MarkDuplicates.java:278)	at net.sf.picard.sam.MarkDuplicates.doWork(MarkDuplicates.java:109)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:160)	at net.sf.picard.sam.MarkDuplicates.main(MarkDuplicates.java:93)