Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

java.lang.ArrayIndexOutOfBoundsException: 97	at org.broadinstitute.sting.utils.fragments.FragmentUtils.mergeOverlappingPairedFragments(FragmentUtils.java:256)	at org.broadinstitute.sting.utils.fragments.FragmentUtils.mergeOverlappingPairedFragments(FragmentUtils.java:200)	at org.broadinstitute.sting.gatk.walkers.haplotypecaller.HaplotypeCaller.finalizeActiveRegion(HaplotypeCaller.java:814)	at org.broadinstitute.sting.gatk.walkers.haplotypecaller.HaplotypeCaller.assembleReads(HaplotypeCaller.java:636)	at org.broadinstitute.sting.gatk.walkers.haplotypecaller.HaplotypeCaller.map(HaplotypeCaller.java:564)	at org.broadinstitute.sting.gatk.walkers.haplotypecaller.HaplotypeCaller.map(HaplotypeCaller.java:135)	at org.broadinstitute.sting.gatk.traversals.TraverseActiveRegions.processActiveRegion(TraverseActiveRegions.java:564)	at org.broadinstitute.sting.gatk.traversals.TraverseActiveRegions.processActiveRegions(TraverseActiveRegions.java:521)	at org.broadinstitute.sting.gatk.traversals.TraverseActiveRegions.traverse(TraverseActiveRegions.java:251)	at org.broadinstitute.sting.gatk.traversals.TraverseActiveRegions.traverse(TraverseActiveRegions.java:70)	at org.broadinstitute.sting.gatk.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:100)	at org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:286)	at org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:113)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:245)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:152)	at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:91)