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via broadinstitute.org by Unknown author, 1 year ago
via broadinstitute.org by Unknown author, 1 year ago
via GitHub by yfarjoun
, 1 year ago
Requesting earlier reference sequence: 0 < 8
via GitHub by tfenne
, 1 year ago
Requesting earlier reference sequence: 0 < 8
via GitHub by raphenya
, 1 year ago
Reference sequence (424) not found in ../../galaxy/tool-data/grch38/seq/grch38.fa
htsjdk.samtools.SAMException: Requesting earlier reference sequence: 0 < 5	at htsjdk.samtools.reference.ReferenceSequenceFileWalker.get(ReferenceSequenceFileWalker.java:82)	at picard.sam.AbstractAlignmentMerger.calculateMdAndNmTags(AbstractAlignmentMerger.java:596)	at picard.sam.AbstractAlignmentMerger.clipForOverlappingReads(AbstractAlignmentMerger.java:622)	at picard.sam.AbstractAlignmentMerger.transferAlignmentInfoToPairedRead(AbstractAlignmentMerger.java:580)	at picard.sam.AbstractAlignmentMerger.mergeAlignment(AbstractAlignmentMerger.java:390)	at picard.sam.SamAlignmentMerger.mergeAlignment(SamAlignmentMerger.java:157)	at picard.sam.MergeBamAlignment.doWork(MergeBamAlignment.java:266)	at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:208)	at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95)	at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)