java.lang.IllegalArgumentException

Malformed CIGAR string: 71M12D-1I30M

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  • via GitHub by JoKw
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  • Stack trace

    • java.lang.IllegalArgumentException: Malformed CIGAR string: 71M12D-1I30M at htsjdk.samtools.TextCigarCodec.decode(TextCigarCodec.java:69) at com.astrazeneca.vardict.VarDict.parseSAM(VarDict.java:1550) at com.astrazeneca.vardict.VarDict.toVars(VarDict.java:2552) at com.astrazeneca.vardict.VarDict.somaticNotParallel(VarDict.java:353) at com.astrazeneca.vardict.VarDict.nonAmpVardict(VarDict.java:249) at com.astrazeneca.vardict.VarDict.start(VarDict.java:65) at com.astrazeneca.vardict.Main.run(Main.java:134) at com.astrazeneca.vardict.Main.main(Main.java:25)

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