java.lang.ArrayIndexOutOfBoundsException: 50

GitHub | bioinfo-dirty-jobs | 6 months ago
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    Fatal error

    GitHub | 6 months ago | bioinfo-dirty-jobs
    java.lang.ArrayIndexOutOfBoundsException: 50

    Root Cause Analysis

    1. java.lang.ArrayIndexOutOfBoundsException

      50

      at qcUtils.qcCigarDistribution$$anonfun$readCigar$2.apply()
    2. qcUtils
      qcCigarDistribution$$anonfun$readCigar$2.apply
      1. qcUtils.qcCigarDistribution$$anonfun$readCigar$2.apply(qcCigarDistribution.scala:90)
      2. qcUtils.qcCigarDistribution$$anonfun$readCigar$2.apply(qcCigarDistribution.scala:78)
      2 frames
    3. Scala
      TraversableLike$WithFilter.foreach
      1. scala.collection.TraversableLike$WithFilter$$anonfun$foreach$1.apply(TraversableLike.scala:778)
      2. scala.collection.immutable.List.foreach(List.scala:383)
      3. scala.collection.TraversableLike$WithFilter.foreach(TraversableLike.scala:777)
      3 frames
    4. qcUtils
      runAllQC$$anonfun$runOnSeqFile$2.apply
      1. qcUtils.qcCigarDistribution$.readCigar(qcCigarDistribution.scala:78)
      2. qcUtils.qcCigarDistribution.runOnReadPair(qcCigarDistribution.scala:122)
      3. qcUtils.qcCigarDistribution.runOnReadPair(qcCigarDistribution.scala:104)
      4. qcUtils.runAllQC$$anonfun$runOnSeqFile$2.apply(runAllQC.scala:1070)
      5. qcUtils.runAllQC$$anonfun$runOnSeqFile$2.apply(runAllQC.scala:1055)
      5 frames
    5. Scala
      Iterator$class.foreach
      1. scala.collection.Iterator$class.foreach(Iterator.scala:743)
      1 frame
    6. internalUtils
      stdUtils$IteratorProgressReporter$$anon$4.foreach
      1. internalUtils.stdUtils$IteratorProgressReporter$$anon$4.foreach(stdUtils.scala:389)
      1 frame
    7. qcUtils
      runAllQC$allQC_runner.run
      1. qcUtils.runAllQC$.runOnSeqFile(runAllQC.scala:1055)
      2. qcUtils.runAllQC$.run(runAllQC.scala:774)
      3. qcUtils.runAllQC$allQC_runner.run(runAllQC.scala:502)
      3 frames