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Samebug tips

  1. ,

    Check the path argument where you call Config.getConfig()

  2. ,

    Check if your config file contains the path you provided to Config.getConfig()

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java.lang.ExceptionInInitializerError at cromwell.engine.backend.local.SharedFileSystem$class.rootPath(SharedFileSystem.scala:113) at cromwell.engine.backend.sge.SgeBackend.rootPath(SgeBackend.scala:47) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$1$1.apply(MaterializeWorkflowDescriptorActor.scala:87) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$1$1.apply(MaterializeWorkflowDescriptorActor.scala:86) at scalaz.ValidationFlatMap.flatMap(Validation.scala:433) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$1(MaterializeWorkflowDescriptorActor.scala:86) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$2$$anonfun$apply$8.apply(MaterializeWorkflowDescriptorActor.scala:110) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$2$$anonfun$apply$8.apply(MaterializeWorkflowDescriptorActor.scala:109) at scalaz.ValidationFlatMap.flatMap(Validation.scala:433) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$2.apply(MaterializeWorkflowDescriptorActor.scala:109) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor$2.apply(MaterializeWorkflowDescriptorActor.scala:103) at scalaz.ValidationFlatMap.flatMap(Validation.scala:433) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$MaterializeWorkflowDescriptorActor$$buildWorkflowDescriptor(MaterializeWorkflowDescriptorActor.scala:103) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor$$anonfun$receive$1.applyOrElse(MaterializeWorkflowDescriptorActor.scala:66) at akka.actor.Actor$class.aroundReceive(Actor.scala:467) at cromwell.engine.workflow.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:59) at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516) at akka.actor.ActorCell.invoke(ActorCell.scala:487) at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238) at akka.dispatch.Mailbox.run(Mailbox.scala:220) at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397) at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)Caused by: com.typesafe.config.ConfigException$Missing: No configuration setting found for key 'shared-filesystem' at com.typesafe.config.impl.SimpleConfig.findKeyOrNull(SimpleConfig.java:152) at com.typesafe.config.impl.SimpleConfig.findOrNull(SimpleConfig.java:170) at com.typesafe.config.impl.SimpleConfig.find(SimpleConfig.java:184) at com.typesafe.config.impl.SimpleConfig.find(SimpleConfig.java:189) at com.typesafe.config.impl.SimpleConfig.getObject(SimpleConfig.java:258) at com.typesafe.config.impl.SimpleConfig.getConfig(SimpleConfig.java:264) at com.typesafe.config.impl.SimpleConfig.getConfig(SimpleConfig.java:37) at cromwell.engine.backend.local.SharedFileSystem$.<init>(SharedFileSystem.scala:27) at cromwell.engine.backend.local.SharedFileSystem$.<clinit>(SharedFileSystem.scala) ... 25 more