java.lang.IllegalArgumentException

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  • error in samfile header
    via by Unknown author,
  • GitHub comment 23#275391715
    via GitHub by daveuu
    ,
    • java.lang.IllegalArgumentException: Program record with group id bc already exists in SAMFileHeader! at net.sf.samtools.SAMFileHeader.addProgramRecord(SAMFileHeader.java:197) at net.sf.samtools.SAMTextHeaderCodec.parsePGLine(SAMTextHeaderCodec.java:150) at net.sf.samtools.SAMTextHeaderCodec.decode(SAMTextHeaderCodec.java:90) at net.sf.picard.util.IntervalList.fromReader(IntervalList.java:181) at net.sf.picard.util.IntervalList.fromFile(IntervalList.java:152) at net.sf.picard.analysis.directed.HsMetricsCalculator.<init>(HsMetricsCalculator.java:83) at net.sf.picard.analysis.directed.CalculateHsMetrics.doWork(CalculateHsMetrics.java:83) at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:158) at net.sf.picard.analysis.directed.CalculateHsMetrics.main(CalculateHsMetrics.java:68)
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