java.lang.IllegalArgumentException: Program record with group id bc already exists in SAMFileHeader!

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via biostars.org by Unknown author, 1 year ago
Program record with group id bc already exists in SAMFileHeader!
via GitHub by daveuu
, 1 year ago
Program record with group id bwa-5057A760 already exists in SAMFileHeader!
java.lang.IllegalArgumentException: Program record with group id bc already exists in SAMFileHeader!	at net.sf.samtools.SAMFileHeader.addProgramRecord(SAMFileHeader.java:197)	at net.sf.samtools.SAMTextHeaderCodec.parsePGLine(SAMTextHeaderCodec.java:150)	at net.sf.samtools.SAMTextHeaderCodec.decode(SAMTextHeaderCodec.java:90)	at net.sf.picard.util.IntervalList.fromReader(IntervalList.java:181)	at net.sf.picard.util.IntervalList.fromFile(IntervalList.java:152)	at net.sf.picard.analysis.directed.HsMetricsCalculator.(HsMetricsCalculator.java:83)	at net.sf.picard.analysis.directed.CalculateHsMetrics.doWork(CalculateHsMetrics.java:83)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:158)	at net.sf.picard.analysis.directed.CalculateHsMetrics.main(CalculateHsMetrics.java:68)