java.lang.IllegalArgumentException: Program record with group id bc already exists in SAMFileHeader!

biostars.org | 4 months ago
  1. 0

    error in samfile header

    biostars.org | 4 months ago
    java.lang.IllegalArgumentException: Program record with group id bc already exists in SAMFileHeader!
  2. 0
    Properties of subclasses may have to be referenced in a different way. More on this here: https://goo.gl/FvnBXb
    via goo.gl
  3. 0
    This error is caused by malformed HTTP request. You are trying to access unsecured page through https.
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0
    URI part of the request contains invalid characters. You may try to encode the path from the URI. Check RFC7230 and RFC3986 documentation below. https://www.ietf.org/rfc/rfc3986.txt and https://tools.ietf.org/html/rfc7230

    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. java.lang.IllegalArgumentException

      Program record with group id bc already exists in SAMFileHeader!

      at net.sf.samtools.SAMFileHeader.addProgramRecord()
    2. picard
      CalculateHsMetrics.main
      1. net.sf.samtools.SAMFileHeader.addProgramRecord(SAMFileHeader.java:197)
      2. net.sf.samtools.SAMTextHeaderCodec.parsePGLine(SAMTextHeaderCodec.java:150)
      3. net.sf.samtools.SAMTextHeaderCodec.decode(SAMTextHeaderCodec.java:90)
      4. net.sf.picard.util.IntervalList.fromReader(IntervalList.java:181)
      5. net.sf.picard.util.IntervalList.fromFile(IntervalList.java:152)
      6. net.sf.picard.analysis.directed.HsMetricsCalculator.<init>(HsMetricsCalculator.java:83)
      7. net.sf.picard.analysis.directed.CalculateHsMetrics.doWork(CalculateHsMetrics.java:83)
      8. net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:158)
      9. net.sf.picard.analysis.directed.CalculateHsMetrics.main(CalculateHsMetrics.java:68)
      9 frames