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  • error in samfile header
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  • SAM tools / Mailing Lists
    via by Unknown author,
    • java.lang.IllegalArgumentException: Cannot add sequence that already exists in SAMSequenceDictionary: chr1 at net.sf.samtools.SAMSequenceDictionary.setSequences( at net.sf.samtools.SAMSequenceDictionary.<init>( at net.sf.samtools.SAMTextHeaderCodec.decode( at net.sf.picard.util.IntervalList.fromReader( at net.sf.picard.util.IntervalList.fromFile( at net.sf.picard.analysis.directed.HsMetricsCalculator.<init>( at net.sf.picard.analysis.directed.CalculateHsMetrics.doWork( at net.sf.picard.cmdline.CommandLineProgram.instanceMain( at net.sf.picard.analysis.directed.CalculateHsMetrics.main(
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