java.lang.IllegalArgumentException: Cannot add sequence that already exists in SAMSequenceDictionary: chr1

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via biostars.org by Unknown author, 1 year ago
Cannot add sequence that already exists in SAMSequenceDictionary: chr1
via sourceforge.net by Unknown author, 1 year ago
Cannot add sequence that already exists in SAMSequenceDictionary: contig00311
java.lang.IllegalArgumentException: Cannot add sequence that already exists in SAMSequenceDictionary: chr1
at net.sf.samtools.SAMSequenceDictionary.setSequences(SAMSequenceDictionary.java:62)
at net.sf.samtools.SAMSequenceDictionary.(SAMSequenceDictionary.java:40)
at net.sf.samtools.SAMTextHeaderCodec.decode(SAMTextHeaderCodec.java:106)
at net.sf.picard.util.IntervalList.fromReader(IntervalList.java:181)
at net.sf.picard.util.IntervalList.fromFile(IntervalList.java:152)
at net.sf.picard.analysis.directed.HsMetricsCalculator.(HsMetricsCalculator.java:83)
at net.sf.picard.analysis.directed.CalculateHsMetrics.doWork(CalculateHsMetrics.java:83)
at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:158)

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