java.lang.OutOfMemoryError

GC overhead limit exceeded

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Stack trace

  • java.lang.OutOfMemoryError: GC overhead limit exceeded at htsjdk.samtools.BinaryTagCodec.readNullTerminatedString(BinaryTagCodec.java:414) at htsjdk.samtools.BinaryTagCodec.readSingleValue(BinaryTagCodec.java:318) at htsjdk.samtools.BinaryTagCodec.readTags(BinaryTagCodec.java:282) at htsjdk.samtools.BAMRecord.decodeAttributes(BAMRecord.java:308) at htsjdk.samtools.BAMRecord.getAttribute(BAMRecord.java:288) at htsjdk.samtools.SAMRecord.getReadGroup(SAMRecord.java:691) at picard.sam.SamToFastq.doWork(SamToFastq.java:166) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:206) at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95) at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)

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