java.io.IOException: read past EOF

nabble.com | 3 months ago
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    java.io.IOException: read past EOF Lucene in Java with Eclipse

    Stack Overflow | 1 year ago | hugh
    java.io.IOException: read past EOF
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    We had a case where Nexus was stopped (not cleanly shutdown) due to a physical machine reboot. When trying to bring the service back up the exception below was thrown in the logs. The resolution was to delete the Lucene index at /sonatype-work/nexus/timeline and then the server started correctly. 2009-03-25 11:05:53.743 ERROR [WrapperListener_start_runner:] - org.mortbay.log: Failed startup of context org.mortbay.jetty.webapp.WebAppContext@ee260b{/repo,../../../runtime/apps/nexus/webapp} java.lang.IllegalStateException: Could not initialize Nexus. at org.sonatype.nexus.web.NexusBooterListener.contextInitialized(NexusBooterListener.java:45) at org.mortbay.jetty.handler.ContextHandler.startContext(ContextHandler.java:548) at org.mortbay.jetty.servlet.Context.startContext(Context.java:136) at org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1234) at org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517) at org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:460) at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50) at org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152) at org.mortbay.jetty.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:156) at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50) at org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapper.java:130) at org.mortbay.jetty.Server.doStart(Server.java:222) at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50) at org.sonatype.plexus.jetty.DefaultServletContainer.start(DefaultServletContainer.java:312) at org.codehaus.plexus.personality.plexus.lifecycle.phase.StartPhase.execute(StartPhase.java:33) at org.codehaus.plexus.lifecycle.AbstractLifecycleHandler.start(AbstractLifecycleHandler.java:97) at org.codehaus.plexus.component.builder.XBeanComponentBuilder.startComponentLifecycle(XBeanComponentBuilder.java:220) at org.codehaus.plexus.component.builder.XBeanComponentBuilder.build(XBeanComponentBuilder.java:98) at org.codehaus.plexus.component.manager.AbstractComponentManager.createComponentInstance(AbstractComponentManager.java:135) at org.codehaus.plexus.component.manager.ClassicSingletonComponentManager.getComponent(ClassicSingletonComponentManager.java:96) at org.codehaus.plexus.DefaultComponentLookupManager.lookup(DefaultComponentLookupManager.java:147) at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:484) at org.codehaus.plexus.container.initialization.StartLoadOnStartComponentsPhase.execute(StartLoadOnStartComponentsPhase.java:69) at org.codehaus.plexus.DefaultPlexusContainer.initializePhases(DefaultPlexusContainer.java:849) at org.codehaus.plexus.DefaultPlexusContainer.initialize(DefaultPlexusContainer.java:813) at org.codehaus.plexus.DefaultPlexusContainer.construct(DefaultPlexusContainer.java:405) at org.codehaus.plexus.DefaultPlexusContainer.<init>(DefaultPlexusContainer.java:196) at org.sonatype.appbooter.PlexusContainerHost.startContainer(PlexusContainerHost.java:280) at org.sonatype.appbooter.jsw.PlexusJSWListener.start(PlexusJSWListener.java:99) at org.tanukisoftware.wrapper.WrapperManager$12.run(WrapperManager.java:2788) Caused by: org.codehaus.plexus.component.repository.exception.ComponentLookupException: Unable to lookup component 'org.sonatype.nexus.Nexus', it could not be started. role: org.sonatype.nexus.Nexus roleHint: default classRealm: plexus at org.codehaus.plexus.DefaultComponentLookupManager.lookup(DefaultComponentLookupManager.java:155) at org.codehaus.plexus.DefaultComponentLookupManager.lookup(DefaultComponentLookupManager.java:69) at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:430) at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:424) at org.sonatype.nexus.web.NexusBooterListener.contextInitialized(NexusBooterListener.java:39) ... 29 more Caused by: org.codehaus.plexus.component.repository.exception.ComponentLifecycleException: Error starting component at org.codehaus.plexus.component.builder.XBeanComponentBuilder.startComponentLifecycle(XBeanComponentBuilder.java:222) at org.codehaus.plexus.component.builder.XBeanComponentBuilder.build(XBeanComponentBuilder.java:98) at org.codehaus.plexus.component.manager.AbstractComponentManager.createComponentInstance(AbstractComponentManager.java:135) at org.codehaus.plexus.component.manager.ClassicSingletonComponentManager.getComponent(ClassicSingletonComponentManager.java:96) at org.codehaus.plexus.DefaultComponentLookupManager.lookup(DefaultComponentLookupManager.java:147) ... 33 more Caused by: org.codehaus.plexus.personality.plexus.lifecycle.phase.PhaseExecutionException: Error starting component at org.codehaus.plexus.personality.plexus.lifecycle.phase.StartPhase.execute(StartPhase.java:37) at org.codehaus.plexus.lifecycle.AbstractLifecycleHandler.start(AbstractLifecycleHandler.java:97) at org.codehaus.plexus.component.builder.XBeanComponentBuilder.startComponentLifecycle(XBeanComponentBuilder.java:220) ... 37 more Caused by: org.codehaus.plexus.personality.plexus.lifecycle.phase.StartingException: Could not start Nexus! at org.sonatype.nexus.DefaultNexus.start(DefaultNexus.java:1564) at org.codehaus.plexus.personality.plexus.lifecycle.phase.StartPhase.execute(StartPhase.java:33) ... 39 more Caused by: org.codehaus.plexus.personality.plexus.lifecycle.phase.StartingException: Cannot start Timeline! at org.sonatype.nexus.timeline.DefaultTimeline.startService(DefaultTimeline.java:173) at org.sonatype.nexus.feeds.DefaultFeedRecorder.startService(DefaultFeedRecorder.java:101) at org.sonatype.nexus.DefaultNexus.startService(DefaultNexus.java:1600) at org.sonatype.nexus.DefaultNexus.start(DefaultNexus.java:1560) ... 40 more Caused by: java.io.IOException: read past EOF at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:146) at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:38) at org.apache.lucene.store.IndexInput.readInt(IndexInput.java:66) at org.apache.lucene.store.IndexInput.readLong(IndexInput.java:89) at org.apache.lucene.index.SegmentInfo.<init>(SegmentInfo.java:140) at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:220) at org.apache.lucene.index.SegmentInfos$1.doBody(SegmentInfos.java:254) at org.apache.lucene.index.SegmentInfos$FindSegmentsFile.run(SegmentInfos.java:636) at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:251) at org.apache.lucene.index.IndexWriter.init(IndexWriter.java:710) at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:614) at org.sonatype.nexus.index.context.NexusIndexWriter.<init>(NexusIndexWriter.java:35) at org.sonatype.nexus.timeline.DefaultTimeline.startService(DefaultTimeline.java:155) ... 43 more

    Sonatype JIRA | 8 years ago | Eric Dalquist
    java.lang.IllegalStateException: Could not initialize Nexus.
  5. 0

    IOException: read past EOF

    GitHub | 2 years ago | kjlubick
    java.io.IOException: read past EOF

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    Root Cause Analysis

    1. java.io.IOException

      read past EOF

      at org.apache.lucene.store.BufferedIndexInput.readBytes()
    2. Lucene
      IndexWriter.close
      1. org.apache.lucene.store.BufferedIndexInput.readBytes(BufferedIndexInput.java:135)
      2. org.apache.lucene.index.CompoundFileReader$CSIndexInput.readInternal(CompoundFileReader.java:247)
      3. org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:157)
      4. org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:38)
      5. org.apache.lucene.store.IndexInput.readInt(IndexInput.java:68)
      6. org.apache.lucene.index.SegmentTermEnum.<init>(SegmentTermEnum.java:50)
      7. org.apache.lucene.index.TermInfosReader.<init>(TermInfosReader.java:76)
      8. org.apache.lucene.index.SegmentReader.initialize(SegmentReader.java:366)
      9. org.apache.lucene.index.SegmentReader.get(SegmentReader.java:306)
      10. org.apache.lucene.index.SegmentReader.get(SegmentReader.java:236)
      11. org.apache.lucene.index.DocumentsWriter.applyDeletes(DocumentsWriter.java:915)
      12. org.apache.lucene.index.IndexWriter.applyDeletes(IndexWriter.java:4336)
      13. org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3572)
      14. org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3442)
      15. org.apache.lucene.index.IndexWriter.closeInternal(IndexWriter.java:1623)
      16. org.apache.lucene.index.IndexWriter.close(IndexWriter.java:1588)
      17. org.apache.lucene.index.IndexWriter.close(IndexWriter.java:1562)
      17 frames
    3. Sonatype Nexus Indexer
      DefaultNexusIndexer.addIndexingContextForced
      1. org.sonatype.nexus.index.context.NexusIndexWriter.close(NexusIndexWriter.java:48)
      2. org.sonatype.nexus.index.context.DefaultIndexingContext.prepareCleanIndex(DefaultIndexingContext.java:215)
      3. org.sonatype.nexus.index.context.DefaultIndexingContext.prepareIndex(DefaultIndexingContext.java:185)
      4. org.sonatype.nexus.index.context.DefaultIndexingContext.<init>(DefaultIndexingContext.java:153)
      5. org.sonatype.nexus.index.DefaultNexusIndexer.addIndexingContextForced(DefaultNexusIndexer.java:149)
      5 frames
    4. org.maven.ide
      RepositoryRegistryUpdateJob.run
      1. org.maven.ide.eclipse.internal.index.NexusIndexManager.createIndexingContext(NexusIndexManager.java:890)
      2. org.maven.ide.eclipse.internal.index.NexusIndexManager.setIndexDetails(NexusIndexManager.java:855)
      3. org.maven.ide.eclipse.internal.index.NexusIndexManager.repositoryAdded(NexusIndexManager.java:800)
      4. org.maven.ide.eclipse.internal.repository.RepositoryRegistry.addRepository(RepositoryRegistry.java:142)
      5. org.maven.ide.eclipse.internal.repository.RepositoryRegistry.updateRegistry(RepositoryRegistry.java:241)
      6. org.maven.ide.eclipse.internal.repository.RepositoryRegistryUpdateJob.run(RepositoryRegistryUpdateJob.java:42)
      6 frames
    5. Eclipse Jobs
      Worker.run
      1. org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
      1 frame