java.lang.Exception: ERROR ERROR ERROR: Reached end of bam file, there are 22763461 orphaned reads, which are marked as having a mapped pair, but no corresponding pair is found in the bam file. (Example Orphaned Read Name: D00118:263:C89KTANXX:4:1209:7544:95127)

GitHub | hartleys | 3 months ago
  1. 0

    GitHub comment 22#247979622

    GitHub | 3 months ago | hartleys
    java.lang.Exception: ERROR ERROR ERROR: Reached end of bam file, there are 22763461 orphaned reads, which are marked as having a mapped pair, but no corresponding pair is found in the bam file. (Example Orphaned Read Name: D00118:263:C89KTANXX:4:1209:7544:95127)
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    Issue with spike-ins

    GitHub | 3 months ago | royfrancis
    java.lang.Exception: ERROR ERROR ERROR: Reached end of bam file, there are 22763461 orphaned reads, which are marked as having a mapped pair, but no corresponding pair is found in the bam file. (Example Orphaned Read Name: D00118:263:C89KTANXX:4:1209:7544:95127)
  3. 0

    The Android Corner: Tutorial: Using Google Translate API In Android

    blogspot.com | 1 year ago
    java.lang.Exception: Google returned the following error: [400] invalid translation language pair
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    What I need to setup netbeans for broadleaf commerce with glassfish 4.1?

    Stack Overflow | 10 months ago | Yogesh Doke
    java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'applicationEventMulticaster': Injection of autowired dependencies failed; nested exception is org.springframework.beans.factory.BeanCreationException: Could not autowire field: private java.util.concurrent.Executor org.broadleafcommerce.common.event.BroadleafApplicationEventMulticaster.taskExecutor; nested exception is org.springframework.beans.factory.CannotLoadBeanClassException: Error loading class [com.mycompany.sample.vendor.nullPaymentGateway.web.processor.NullPaymentGatewayTRExtensionHandler] for bean with name 'blNullPaymentGatewayTRExtensionHandler' defined in URL [jar:file:/home/yogesh/Documents/eclipse-workspace/DemoSite/admin/target/admin/WEB-INF/lib/core-1.0.jar!/com/mycompany/sample/vendor/nullPaymentGateway/web/processor/NullPaymentGatewayTRExtensionHandler.class]: problem with class file or dependent class; nested exception is java.lang.UnsupportedClassVersionError: Class com.mycompany.sample.vendor.nullPaymentGateway.web.processor.NullPaymentGatewayTRExtensionHandler has unsupported major or minor version numbers, which are greater than those found in the Java Runtime Environment version 1.7.0_80
  6. 0

    OFBiz - Dev - [jira] [Created] (OFBIZ-6580) Currencies of invoice and payment not compatible

    nabble.com | 1 year ago
    java.lang.Exception: Error:Error trying to begin transaction, could not process method: The current transaction is marked for rollback, not beginning a new transaction and aborting current operation; the rollbackOnly was caused by: Error in simple-method [Create a Payment Application [file:/E:/ofbizusdemo/applications/accounting/script/org/ofbiz/accounting/payment/PaymentServices.xml#createPaymentApplication]]: ; [Currencies of invoice and payment not compatible]

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    Root Cause Analysis

    1. java.lang.Exception

      ERROR ERROR ERROR: Reached end of bam file, there are 22763461 orphaned reads, which are marked as having a mapped pair, but no corresponding pair is found in the bam file. (Example Orphaned Read Name: D00118:263:C89KTANXX:4:1209:7544:95127)

      at internalUtils.Reporter$.error()
    2. internalUtils
      stdUtils$IteratorProgressReporter$$anon$4.next
      1. internalUtils.Reporter$.error(Reporter.scala:269)
      2. internalUtils.commonSeqUtils$$anon$2.next(commonSeqUtils.scala:728)
      3. internalUtils.commonSeqUtils$$anon$2.next(commonSeqUtils.scala:699)
      4. internalUtils.stdUtils$IteratorProgressReporter$$anon$4.next(stdUtils.scala:302)
      4 frames
    3. Scala
      Iterator$class.foreach
      1. scala.collection.Iterator$class.foreach(Iterator.scala:743)
      1 frame
    4. internalUtils
      stdUtils$IteratorProgressReporter$$anon$4.foreach
      1. internalUtils.stdUtils$IteratorProgressReporter$$anon$4.foreach(stdUtils.scala:296)
      1 frame
    5. qcUtils
      runAllQC$allQC_runner.run
      1. qcUtils.runAllQC$.runOnSeqFile(runAllQC.scala:1055)
      2. qcUtils.runAllQC$.run(runAllQC.scala:774)
      3. qcUtils.runAllQC$allQC_runner.run(runAllQC.scala:502)
      3 frames
    6. runner
      runner.main
      1. runner.runner$.main(runner.scala:92)
      2. runner.runner.main(runner.scala)
      2 frames