javax.xml.transform.TransformerException: java.lang.RuntimeException: Namespace for prefix 'jigcell' has not been declared.

GitHub | matthiaskoenig | 6 months ago
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  1. 0

    Writing node html information with unknown namespaces fails

    GitHub | 6 months ago | matthiaskoenig
    javax.xml.transform.TransformerException: java.lang.RuntimeException: Namespace for prefix 'jigcell' has not been declared.
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    codedmi.com | 1 year ago
    org.xhtmlrenderer.util.XRRuntimeException: Can't load the XML resource (using TRaX transformer). org.xml.sax.SAXParseException; lineNumber: 12; columnNumber: 71; The element type "SCRIPT" must be terminated by the matching end-tag "</SCRIPT>".

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Root Cause Analysis

  1. java.lang.RuntimeException

    Namespace for prefix 'jigcell' has not been declared.

    at com.sun.org.apache.xml.internal.serializer.SerializerBase.getNamespaceURI()
  2. Java RT
    TransformerImpl.transform
    1. com.sun.org.apache.xml.internal.serializer.SerializerBase.getNamespaceURI(SerializerBase.java:915)
    2. com.sun.org.apache.xml.internal.serializer.SerializerBase.addAttribute(SerializerBase.java:431)
    3. com.sun.org.apache.xml.internal.serializer.ToUnknownStream.addAttribute(ToUnknownStream.java:316)
    4. com.sun.org.apache.xalan.internal.xsltc.trax.DOM2TO.parse(DOM2TO.java:201)
    5. com.sun.org.apache.xalan.internal.xsltc.trax.DOM2TO.parse(DOM2TO.java:136)
    6. com.sun.org.apache.xalan.internal.xsltc.trax.DOM2TO.parse(DOM2TO.java:98)
    7. com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transformIdentity(TransformerImpl.java:693)
    8. com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:737)
    9. com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:351)
    9 frames
  3. org.cy3sbml.util
    XMLUtil.xml2Html
    1. org.cy3sbml.util.XMLUtil.writeNodeToTidyString(XMLUtil.java:113)
    2. org.cy3sbml.util.XMLUtil.xml2Html(XMLUtil.java:38)
    2 frames
  4. org.cy3sbml.gui
    SBaseHTMLThread.run
    1. org.cy3sbml.gui.SBaseHTMLFactory.createNonRDFAnnotation(SBaseHTMLFactory.java:694)
    2. org.cy3sbml.gui.SBaseHTMLFactory.createInfoForSBase(SBaseHTMLFactory.java:192)
    3. org.cy3sbml.gui.SBaseHTMLFactory.createInfo(SBaseHTMLFactory.java:167)
    4. org.cy3sbml.gui.SBaseHTMLThread.run(SBaseHTMLThread.java:33)
    4 frames