java.io.FileNotFoundException: Couldn't find any files matching *.adam

GitHub | jpdna | 3 months ago
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    How to read glob of multiple parquet Genotype

    GitHub | 3 months ago | jpdna
    java.io.FileNotFoundException: Couldn't find any files matching *.adam
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    Transform -limit_projection requires .sam.seqdict file

    GitHub | 10 months ago | heuermh
    java.io.FileNotFoundException: File adam-core/src/test/resources/small.sam.seqdict does not exist
  3. 0

    File _rgdict.avro does not exist

    GitHub | 3 months ago | ooliynyk
    java.io.FileNotFoundException: File file:/tmp/a7.adam/_rgdict.avro does not exist
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  5. 0

    Too many open files

    GitHub | 1 year ago | reagere
    java.io.FileNotFoundException: /tmp/jetty-0.0.0.0-8080-globulus.war-_globulus-any-7404471105146041798.dir/webapp/WEB-INF/classes/hbase-site.xml (Too many open files)
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    FileNotFoundException when copying a text file

    Stack Overflow | 1 month ago | Byczku brony
    java.io.FileNotFoundException: files\copytest.txt (The system can not find the path specified)

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    Root Cause Analysis

    1. java.io.FileNotFoundException

      Couldn't find any files matching *.adam

      at org.bdgenomics.adam.rdd.ADAMContext.getFsAndFilesWithFilter()
    2. org.bdgenomics.adam
      ADAMContext.loadParquetAlignments
      1. org.bdgenomics.adam.rdd.ADAMContext.getFsAndFilesWithFilter(ADAMContext.scala:391)
      2. org.bdgenomics.adam.rdd.ADAMContext.loadAvroSequences(ADAMContext.scala:207)
      3. org.bdgenomics.adam.rdd.ADAMContext.loadParquetAlignments(ADAMContext.scala:637)
      3 frames