java.lang.IllegalArgumentException: Error constructing DecadentRead from Read({ : , : { : , : , : , : , : , : , : }, : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : }) at org.bdgenomics.adam.rich.DecadentRead$.apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$.apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$$anonfun$cloy$ apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$$anonfun$cloy$ apply(DecadentRead.scala: ) at scala.collection.Iterator$$anon$ next(Iterator.scala: ) at org.apache.spark.util.Utils$.getIteratorSize(Utils.scala: ) at org.apache.spark.rdd.RDD$$anonfun$count$ apply(RDD.scala: ) at org.apache.spark.rdd.RDD$$anonfun$count$ apply(RDD.scala: ) at org.apache.spark.SparkContext$$anonfun$runJob$ apply(SparkContext.scala: ) at org.apache.spark.SparkContext$$anonfun$runJob$ apply(SparkContext.scala: ) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala: ) at org.apache.spark.scheduler.Task.run(Task.scala: ) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala: )

csdn.net | 7 months ago
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    java.lang.IllegalArgumentException: argument type mismatch</loc-message> <stack-trace></stack-trace> </msg-loc-info> </exception-info> </task-result-details> </component-task-result-details> </component-task-result> at org.apache.servicemix.common.ManagementSupport.failure(ManagementSupport.java:46)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.AbstractDeployer.failure(AbstractDeployer.java:43)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.xbean.AbstractXBeanDeployer.deploy(AbstractXBeanDeployer.java:118)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.BaseServiceUnitManager.doDeploy(BaseServiceUnitManager.java:88)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.BaseServiceUnitManager.deploy(BaseServiceUnitManager.java:69)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.artifacts.ServiceUnitImpl.deploy(ServiceUnitImpl.java:104)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.ServiceAssemblyInstaller.deploySUs(ServiceAssemblyInstaller.java:207)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.ServiceAssemblyInstaller.install(ServiceAssemblyInstaller.java:85)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.Deployer.onBundleStarted(Deployer.java:334)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.Deployer.bundleChanged(Deployer.java:264)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.eclipse.osgi.framework.internal.core.BundleContextImpl.dispatchEvent(BundleContextImpl.java:919)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:227)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:149)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.Framework.publishBundleEventPrivileged(Framework.java:1349)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.Framework.publishBundleEvent(Framework.java:1300)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.BundleHost.startWorker(BundleHost.java:380)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:284)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:276)[osgi-3.6.0.v20100517.jar:] at org.apache.karaf.shell.osgi.RestartBundle.doExecute(RestartBundle.java:32)[27:org.apache.karaf.shell.osgi:2.1.6.fuse-01-01] at org.apache.karaf.shell.osgi.BundlesCommand.doExecute(BundlesCommand.java:49)[27:org.apache.karaf.shell.osgi:2.1.6.fuse-01-01] at org.apache.karaf.shell.console.OsgiCommandSupport.execute(OsgiCommandSupport.java:38)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.commands.basic.AbstractCommand.execute(AbstractCommand.java:35)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.CommandProxy.execute(CommandProxy.java:50)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.execute(Closure.java:229)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.executeStatement(Closure.java:162)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Pipe.run(Pipe.java:101)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.execute(Closure.java:79)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.CommandSessionImpl.execute(CommandSessionImpl.java:71)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.karaf.shell.console.jline.Console.run(Console.java:170)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01]

  1. Sooraj Singh 2 times, last 9 months ago
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Root Cause Analysis

  1. java.lang.IllegalArgumentException

    Error constructing DecadentRead from Read({ : , : { : , : , : , : , : , : , : }, : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : , : }) at org.bdgenomics.adam.rich.DecadentRead$.apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$.apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$$anonfun$cloy$ apply(DecadentRead.scala: ) at org.bdgenomics.adam.rich.DecadentRead$$anonfun$cloy$ apply(DecadentRead.scala: ) at scala.collection.Iterator$$anon$ next(Iterator.scala: ) at org.apache.spark.util.Utils$.getIteratorSize(Utils.scala: ) at org.apache.spark.rdd.RDD$$anonfun$count$ apply(RDD.scala: ) at org.apache.spark.rdd.RDD$$anonfun$count$ apply(RDD.scala: ) at org.apache.spark.SparkContext$$anonfun$runJob$ apply(SparkContext.scala: ) at org.apache.spark.SparkContext$$anonfun$runJob$ apply(SparkContext.scala: ) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala: ) at org.apache.spark.scheduler.Task.run(Task.scala: ) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala: )

    at java.util.concurrent.ThreadPoolExecutor.runWorker()
  2. Java RT
    Thread.run
    1. java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
    2. java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
    3. java.lang.Thread.run(Unknown Source)
    3 frames