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via broadinstitute.org by Unknown author, 1 year ago
Duplicate definition of argument with full name: filter_mismatching_base_and_quals
org.broadinstitute.sting.utils.exceptions.ReviewedStingException: Duplicate definition of argument with full name: filter_mismatching_base_and_quals at org.broadinstitute.sting.commandline.ArgumentDefinitions.add(ArgumentDefinitions.java:59) at org.broadinstitute.sting.commandline.ParsingEngine.addArgumentSource(ParsingEngine.java:147) at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:198) at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146) at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:93)