Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via broadinstitute.org by Unknown author, 1 year ago
Duplicate definition of argument with full name: filter_mismatching_base_and_quals
org.broadinstitute.sting.utils.exceptions.ReviewedStingException: Duplicate definition of argument with full name: filter_mismatching_base_and_quals	at org.broadinstitute.sting.commandline.ArgumentDefinitions.add(ArgumentDefinitions.java:59)	at org.broadinstitute.sting.commandline.ParsingEngine.addArgumentSource(ParsingEngine.java:147)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:198)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146)	at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:93)