com.esotericsoftware.kryo.KryoException: java.lang.UnsupportedOperationException Serialization trace: mAlignmentBlocks (htsjdk.samtools.SAMRecord)

Stack Overflow | pythonic | 5 months ago
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  1. 0

    Kryo java.lang.UnspportedOperationException

    Stack Overflow | 5 months ago | pythonic
    com.esotericsoftware.kryo.KryoException: java.lang.UnsupportedOperationException Serialization trace: mAlignmentBlocks (htsjdk.samtools.SAMRecord)
  2. 0

    Spark SQL 1.3 - Exception in Elasticsearch when executing JOIN with DataFrame created from Oracle's table

    GitHub | 2 years ago | fdmitriy
    com.esotericsoftware.kryo.KryoException: Class cannot be created (missing no-arg constructor): org.elasticsearch.spark.sql.ScalaEsRow
  3. 0

    GitHub comment 55#17326772

    GitHub | 4 years ago | ngocdaothanh
    com.esotericsoftware.kryo.KryoException: Buffer underflow. Serialization trace: thr$2 (scala.util.continuations.ControlContext$$anonfun$flatMap$2$$anonfun$apply$2)
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  5. 0

    Re: Spark SQL UDT Kryo serialization, Unable to find class

    apache.org | 1 year ago
    com.esotericsoftware.kryo.KryoException: Unable to find class: com.gis.io.GeometryWritable* Serialization trace: value (org.apache.spark.sql.catalyst.expressions.MutableAny) values (org.apache.spark.sql.catalyst.expressions.SpecificMutableRow)
  6. 0

    Re: Spark SQL UDT Kryo serialization, Unable to find class

    apache.org | 1 year ago
    com.esotericsoftware.kryo.KryoException: Unable to find class: com.gis.io.GeometryWritable* Serialization trace: value (org.apache.spark.sql.catalyst.expressions.MutableAny) values (org.apache.spark.sql.catalyst.expressions.SpecificMutableRow)

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    Root Cause Analysis

    1. com.esotericsoftware.kryo.KryoException

      java.lang.UnsupportedOperationException Serialization trace: mAlignmentBlocks (htsjdk.samtools.SAMRecord)

      at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read()
    2. Kryo
      Kryo.readClassAndObject
      1. com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:626)
      2. com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221)
      3. com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729)
      3 frames
    3. chill-java
      Tuple2Serializer.read
      1. com.twitter.chill.Tuple2Serializer.read(TupleSerializers.scala:42)
      2. com.twitter.chill.Tuple2Serializer.read(TupleSerializers.scala:33)
      2 frames
    4. Kryo
      Kryo.readClassAndObject
      1. com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729)
      1 frame
    5. Spark
      NextIterator.hasNext
      1. org.apache.spark.serializer.KryoDeserializationStream.readObject(KryoSerializer.scala:228)
      2. org.apache.spark.serializer.DeserializationStream.readValue(Serializer.scala:171)
      3. org.apache.spark.serializer.DeserializationStream$$anon$2.getNext(Serializer.scala:201)
      4. org.apache.spark.serializer.DeserializationStream$$anon$2.getNext(Serializer.scala:198)
      5. org.apache.spark.util.NextIterator.hasNext(NextIterator.scala:73)
      5 frames
    6. Scala
      Iterator$$anon$11.hasNext
      1. scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
      2. scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
      2 frames
    7. Spark
      RDD.computeOrReadCheckpoint
      1. org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32)
      2. org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:39)
      3. org.apache.spark.util.collection.ExternalAppendOnlyMap.insertAll(ExternalAppendOnlyMap.scala:152)
      4. org.apache.spark.Aggregator.combineValuesByKey(Aggregator.scala:45)
      5. org.apache.spark.shuffle.BlockStoreShuffleReader.read(BlockStoreShuffleReader.scala:89)
      6. org.apache.spark.rdd.ShuffledRDD.compute(ShuffledRDD.scala:98)
      7. org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
      8. org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
      9. org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
      10. org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
      10 frames