java.io.IOException: No space left on device

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    GATK: unable to write data to BAM schedule file - SEQanswers

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    org.broadinstitute.sting.utils.exceptions.ReviewedStingException: Unable to write data to BAM schedule file.

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    Root Cause Analysis

    1. java.io.IOException

      No space left on device

      at sun.nio.ch.FileDispatcher.pwrite0()
    2. Java RT
      FileChannelImpl.write
      1. sun.nio.ch.FileDispatcher.pwrite0(Native Method)
      2. sun.nio.ch.FileDispatcher.pwrite(FileDispatcher.java:45)
      3. sun.nio.ch.IOUtil.writeFromNativeBuffer(IOUtil.java:100)
      4. sun.nio.ch.IOUtil.write(IOUtil.java:75)
      5. sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:651)
      5 frames
    3. Derby
      EmbedPreparedStatement.execute
      1. org.apache.derby.impl.store.raw.data.RAFContainer4.writeFull(UnknownSource)
      2. org.apache.derby.impl.store.raw.data.RAFContainer4.writePage0(UnknownSource)
      3. org.apache.derby.impl.store.raw.data.RAFContainer4.writePage(UnknownSource)
      4. org.apache.derby.impl.store.raw.data.CachedPage.writePage(UnknownSource)
      5. org.apache.derby.impl.store.raw.data.CachedPage.createIdentity(UnknownSource)
      6. org.apache.derby.impl.services.cache.ConcurrentCache.create(UnknownSource)
      7. org.apache.derby.impl.store.raw.data.FileContainer.initPage(UnknownSource)
      8. org.apache.derby.impl.store.raw.data.FileContainer.newPage(UnknownSource)
      9. org.apache.derby.impl.store.raw.data.BaseContainer.addPage(UnknownSource)
      10. org.apache.derby.impl.store.raw.data.BaseContainerHandle.addPage(UnknownSource)
      11. org.apache.derby.impl.store.access.btree.LeafControlRow.allocate(UnknownSource)
      12. org.apache.derby.impl.store.access.btree.LeafControlRow.splitFor(UnknownSource)
      13. org.apache.derby.impl.store.access.btree.BranchControlRow.splitFor(UnknownSource)
      14. org.apache.derby.impl.store.access.btree.BranchControlRow.splitFor(UnknownSource)
      15. org.apache.derby.impl.store.access.btree.BTreeController.start_xact_and_dosplit(UnknownSource)
      16. org.apache.derby.impl.store.access.btree.BTreeController.doIns(UnknownSource)
      17. org.apache.derby.impl.store.access.btree.BTreeController.insert(UnknownSource)
      18. org.apache.derby.impl.store.access.btree.index.B2IController.insert(UnknownSource)
      19. org.apache.derby.impl.sql.execute.IndexChanger.insertAndCheckDups(UnknownSource)
      20. org.apache.derby.impl.sql.execute.IndexChanger.doInsert(Unknown Source)
      21. org.apache.derby.impl.sql.execute.IndexChanger.insert(Unknown Source)
      22. org.apache.derby.impl.sql.execute.IndexSetChanger.insert(Unknown Source)
      23. org.apache.derby.impl.sql.execute.RowChangerImpl.insertRow(UnknownSource)
      24. org.apache.derby.impl.sql.execute.InsertResultSet.normalInsertCore(UnknownSource)
      25. org.apache.derby.impl.sql.execute.InsertResultSet.open(Unknown Source)
      26. org.apache.derby.impl.sql.GenericPreparedStatement.execute(UnknownSource)
      27. org.apache.derby.impl.jdbc.EmbedStatement.executeStatement(UnknownSource)
      28. org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeStatement(UnknownSource)
      29. org.apache.derby.impl.jdbc.EmbedPreparedStatement.execute(UnknownSource)
      29 frames
    4. Apache Derby Network Server
      DRDAConnThread.run
      1. org.apache.derby.impl.drda.DRDAStatement.execute(Unknown Source)
      2. org.apache.derby.impl.drda.DRDAConnThread.parseEXCSQLSTTobjects(UnknownSource)
      3. org.apache.derby.impl.drda.DRDAConnThread.parseEXCSQLSTT(Unknown Source)
      4. org.apache.derby.impl.drda.DRDAConnThread.processCommands(UnknownSource)
      5. org.apache.derby.impl.drda.DRDAConnThread.run(Unknown Source)
      5 frames