java.lang.RuntimeException: invoke runExtractSpecies fails

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via GitHub by psychemedia
, 1 year ago
invoke runTransform fails
via GitHub by tarrow
, 1 year ago
invoke runTransform fails
java.lang.RuntimeException: invoke runExtractSpecies fails
at org.xmlcml.ami2.dictionary.DefaultAMIDictionary.contains(DefaultAMIDictionary.java:112)
at org.xmlcml.ami2.plugins.AMISearcher.markFalsePositives(AMISearcher.java:380)
at org.xmlcml.ami2.plugins.AMISearcher.search(AMISearcher.java:284)
at org.xmlcml.ami2.plugins.AMIArgProcessor.searchSectionElements(AMIArgProcessor.java:298)
at org.xmlcml.ami2.plugins.species.SpeciesArgProcessor.runExtractSpecies(SpeciesArgProcessor.java:57)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.xmlcml.cmine.args.DefaultArgProcessor.instantiateAndRunMethod(DefaultArgProcessor.java:871)
at org.xmlcml.cmine.args.DefaultArgProcessor.runMethodsOfType(DefaultArgProcessor.java:768)
at org.xmlcml.cmine.args.DefaultArgProcessor.runRunMethodsOnChosenArgOptions(DefaultArgProcessor.java:749)
at org.xmlcml.ami2.plugins.AMIArgProcessor.runRunMethodsOnChosenArgOptions(AMIArgProcessor.java:176)
at org.xmlcml.cmine.args.DefaultArgProcessor.runAndOutput(DefaultArgProcessor.java:929)
at org.xmlcml.ami2.plugins.species.SpeciesPlugin.main(SpeciesPlugin.java:36)

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