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Samebug tips

  1. ,

    If the directory ../.foo/bar/ doesn't exist, you can't create a file there, so make sure you create the directory first.

    File f = new File("somedirname1/somedirname2/somefilename");
    if (!f.getParentFile().exists())
        f.getParentFile().mkdirs();
    

Solutions on the web

via GitHub by yhoogstrate
, 1 year ago
Exception creating temporary directory.
via GitHub by yingsun-ucsd
, 6 months ago
Exception creating temporary directory.
via usegalaxy.org by Unknown author, 2 years ago
Exception creating temporary directory.
via GitHub by yhoogstrate
, 1 year ago
Exception creating temporary directory.
via GitHub by FarahZKhan
, 1 year ago
Exception creating temporary directory.
via GitHub by olegs
, 6 months ago
Could not create temporary directory /tmp/3481979.mgt2.cluster/CSPI.8518873774469239343.tmp
java.io.IOException: Permission denied	at java.io.UnixFileSystem.createFileExclusively(Native Method)	at java.io.File.createNewFile(File.java:1006)	at java.io.File.createTempFile(File.java:1989)	at java.io.File.createTempFile(File.java:2040)	at htsjdk.samtools.util.IOUtil.createTempDir(IOUtil.java:668)