java.lang.RuntimeException: Enumeration resulted in non-singular expression: '1800880553_1_splitoutput.000000000.fa' '1800880553_1_splitoutput.000000001.fa' '1800880553_1_splitoutput.000000002.fa' '1800880553_1_splitoutput.000000003.fa' '1800880553_1_splitoutput.000000004.fa' '1800880553_1_splitoutput.000000005.fa' '1800880553_1_splitoutput.000000006.fa' '1800880553_1_splitoutput.000000007.fa' '1800880553_1_splitoutput.000000008.fa' '1800880553_1_splitoutput.000000009.fa' '1800880553_1_splitoutput.000000010.fa' '1800880553_1_splitoutput.000000011.fa' '1800880553_1_splitoutput.000000012.fa' '1800880553_1_splitoutput.000000013.fa' '1800880553_1_splitoutput.000000014.fa' '1800880553_1_splitoutput.000000015.fa' '1800880553_1_splitoutput.000000016.fa'

GitHub | joergen7 | 3 years ago
  1. 0

    CombiHelper throws exception when consuming reduce output-variable from foreign task application

    GitHub | 3 years ago | joergen7
    java.lang.RuntimeException: Enumeration resulted in non-singular expression: '1800880553_1_splitoutput.000000000.fa' '1800880553_1_splitoutput.000000001.fa' '1800880553_1_splitoutput.000000002.fa' '1800880553_1_splitoutput.000000003.fa' '1800880553_1_splitoutput.000000004.fa' '1800880553_1_splitoutput.000000005.fa' '1800880553_1_splitoutput.000000006.fa' '1800880553_1_splitoutput.000000007.fa' '1800880553_1_splitoutput.000000008.fa' '1800880553_1_splitoutput.000000009.fa' '1800880553_1_splitoutput.000000010.fa' '1800880553_1_splitoutput.000000011.fa' '1800880553_1_splitoutput.000000012.fa' '1800880553_1_splitoutput.000000013.fa' '1800880553_1_splitoutput.000000014.fa' '1800880553_1_splitoutput.000000015.fa' '1800880553_1_splitoutput.000000016.fa'
  2. 0

    Workflow execution fails intermittently on htcondor platform with "A name 'out( File )' is not bound in this block."

    GitHub | 10 months ago | iguberman
    java.lang.RuntimeException: A name 'out( File )' is not bound in this block.
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  4. 0

    Problem finding bwa index when running ABRA

    GitHub | 2 years ago | mgfield
    java.lang.RuntimeException: BWA exited with non-zero return code : [1] for command: [bwa mem -t 8 /nethome/mfield/ref_files/hg19.fa abra_temp_dir/all_contigs.fasta > abr$

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    Root Cause Analysis

    1. java.lang.RuntimeException

      Enumeration resulted in non-singular expression: '1800880553_1_splitoutput.000000000.fa' '1800880553_1_splitoutput.000000001.fa' '1800880553_1_splitoutput.000000002.fa' '1800880553_1_splitoutput.000000003.fa' '1800880553_1_splitoutput.000000004.fa' '1800880553_1_splitoutput.000000005.fa' '1800880553_1_splitoutput.000000006.fa' '1800880553_1_splitoutput.000000007.fa' '1800880553_1_splitoutput.000000008.fa' '1800880553_1_splitoutput.000000009.fa' '1800880553_1_splitoutput.000000010.fa' '1800880553_1_splitoutput.000000011.fa' '1800880553_1_splitoutput.000000012.fa' '1800880553_1_splitoutput.000000013.fa' '1800880553_1_splitoutput.000000014.fa' '1800880553_1_splitoutput.000000015.fa' '1800880553_1_splitoutput.000000016.fa'

      at de.huberlin.wbi.cuneiform.core.semanticmodel.CombiHelper.getSingularBindingBlock()
    2. de.huberlin.wbi
      Actor.run
      1. de.huberlin.wbi.cuneiform.core.semanticmodel.CombiHelper.getSingularBindingBlock(CombiHelper.java:142)
      2. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.combineParam(DynamicNodeVisitor.java:523)
      3. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:269)
      4. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:1)
      5. de.huberlin.wbi.cuneiform.core.semanticmodel.ApplyExpr.visit(ApplyExpr.java:288)
      6. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:309)
      7. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:1)
      8. de.huberlin.wbi.cuneiform.core.semanticmodel.CompoundExpr.visit(CompoundExpr.java:204)
      9. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:768)
      10. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.accept(DynamicNodeVisitor.java:1)
      11. de.huberlin.wbi.cuneiform.core.semanticmodel.TopLevelContext.visit(TopLevelContext.java:127)
      12. de.huberlin.wbi.cuneiform.core.repl.DynamicNodeVisitor.step(DynamicNodeVisitor.java:470)
      13. de.huberlin.wbi.cuneiform.core.repl.BaseRepl.ticketFinished(BaseRepl.java:215)
      14. de.huberlin.wbi.cuneiform.core.ticketsrc.TicketSrcActor.processMsg(TicketSrcActor.java:129)
      15. de.huberlin.wbi.cuneiform.core.actormodel.Actor.processQueue(Actor.java:79)
      16. de.huberlin.wbi.cuneiform.core.actormodel.Actor.run(Actor.java:108)
      16 frames
    3. Java RT
      Thread.run
      1. java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
      2. java.util.concurrent.FutureTask.run(FutureTask.java:266)
      3. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      4. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      5. java.lang.Thread.run(Thread.java:745)
      5 frames