java.lang.AssertionError: assertion failed: Timer name from on top of stack [/GET variants(19,false)] did not match passed-in timer name [GET reads]

GitHub | Georgehe4 | 2 months ago
  1. 0

    Server Error 500 in Front End

    GitHub | 2 months ago | Georgehe4
    java.lang.AssertionError: assertion failed: Timer name from on top of stack [/GET variants(19,false)] did not match passed-in timer name [GET reads]
  2. 0

    Server Error 500 in Front End

    GitHub | 2 months ago | Georgehe4
    java.lang.AssertionError: assertion failed: Timer name from on top of stack [/GET variants(19,false)] did not match passed-in timer name [GET reads]
  3. 0

    Asynchronous Requests Throw Exceptions

    GitHub | 9 months ago | erictu
    java.lang.AssertionError: assertion failed: Timer name from on top of stack [/GET variants(3,false)] did not match passed-in timer name [GET alignment]
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  5. 0

    Cannot use coref

    GitHub | 3 years ago | schmmd
    java.lang.AssertionError: assertion failed: Could not find annotator for goal class cc.factorie.app.nlp.phrase.NounPhraseList, map includes class cc.factorie.app.nlp.phrase.NumberLabel, class cc.factorie.app.nlp.ner.NerTag, class cc.factorie.app.nlp.lemma.SimplifyDigitsTokenLemma, class cc.factorie.app.nlp.coref.mention.ParseBasedMentionList, class cc.factorie.app.nlp.pos.PennPosTag, class cc.factorie.app.nlp.segment.PlainNormalizedTokenString, class cc.factorie.app.nlp.Token, class cc.factorie.app.nlp.ner.BilouConllNerTag, class cc.factorie.app.nlp.coref.mention.MentionEntityType, class cc.factorie.util.coref.GenericEntityMap, class cc.factorie.app.nlp.lemma.CollapseDigitsTokenLemma, class cc.factorie.app.nlp.ner.BilouOntonotesNerTag, class cc.factorie.app.nlp.phrase.GenderLabel, class cc.factorie.app.nlp.lemma.WordNetTokenLemma, class cc.factorie.app.nlp.parse.ParseTree, class cc.factorie.app.nlp.Sentence, class cc.factorie.app.nlp.lemma.PorterTokenLemma, class cc.factorie.app.nlp.coref.mention.NerMentionList, class cc.factorie.app.nlp.lemma.LowercaseTokenLemma
  6. 0

    Error when running profile with Cypher query

    GitHub | 3 years ago | peterneubauer
    java.lang.AssertionError: assertion failed: Can't profile the same pipe twice: NullPipe(SymbolTable(Map(a -> Node, b -> Node)),Eager() Filter(pred="Property(b,name(0)) == Literal(Central)") NodeByLabel(label="Division", identifier="b") Filter(pred="Property(a,name(0)) == Literal(East)") NodeByLabel(label="Conference", identifier="a"))

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Root Cause Analysis

  1. java.lang.AssertionError

    assertion failed: Timer name from on top of stack [/GET variants(19,false)] did not match passed-in timer name [GET reads]

    at scala.Predef$.assert()
  2. Scala
    Predef$.assert
    1. scala.Predef$.assert(Predef.scala:179)
    1 frame
  3. org.bdgenomics.utils
    MetricsRecorder.finishPhase
    1. org.bdgenomics.utils.instrumentation.MetricsRecorder.finishPhase(MetricsRecorder.scala:55)
    1 frame
  4. Spark
    Timer$$anonfun$time$1.apply
    1. org.apache.spark.rdd.Timer$$anonfun$time$1.apply(Timer.scala:54)
    2. org.apache.spark.rdd.Timer$$anonfun$time$1.apply(Timer.scala:48)
    2 frames
  5. Scala
    Option.fold
    1. scala.Option.fold(Option.scala:157)
    1 frame
  6. Spark
    Timer.time
    1. org.apache.spark.rdd.Timer.time(Timer.scala:48)
    1 frame
  7. org.bdgenomics.mango
    VizServlet$$anonfun$12.apply
    1. org.bdgenomics.mango.cli.VizServlet$$anonfun$12.apply(VizReads.scala:308)
    2. org.bdgenomics.mango.cli.VizServlet$$anonfun$12.apply(VizReads.scala:308)
    2 frames
  8. org.scalatra
    ScalatraBase$class.withRouteMultiParams
    1. org.scalatra.ScalatraBase$class.org$scalatra$ScalatraBase$$liftAction(ScalatraBase.scala:285)
    2. org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:279)
    3. org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:279)
    4. org.scalatra.ScalatraBase$class.withRouteMultiParams(ScalatraBase.scala:356)
    4 frames
  9. org.bdgenomics.mango
    VizServlet.withRouteMultiParams
    1. org.bdgenomics.mango.cli.VizServlet.withRouteMultiParams(VizReads.scala:211)
    1 frame
  10. org.scalatra
    ScalatraBase$class.invoke
    1. org.scalatra.ScalatraBase$class.invoke(ScalatraBase.scala:278)
    1 frame
  11. org.bdgenomics.mango
    VizServlet.invoke
    1. org.bdgenomics.mango.cli.VizServlet.invoke(VizReads.scala:211)
    1 frame
  12. org.scalatra
    ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply
    1. org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:253)
    2. org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:251)
    2 frames
  13. Scala
    Option.flatMap
    1. scala.Option.flatMap(Option.scala:170)
    1 frame
  14. org.scalatra
    ScalatraBase$$anonfun$runRoutes$1.apply
    1. org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:251)
    2. org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:250)
    2 frames
  15. Scala
    Stream.flatMap
    1. scala.collection.immutable.Stream.flatMap(Stream.scala:446)
    1 frame
  16. org.scalatra
    ScalatraBase$class.runRoutes
    1. org.scalatra.ScalatraBase$class.runRoutes(ScalatraBase.scala:250)
    1 frame
  17. org.bdgenomics.mango
    VizServlet.runRoutes
    1. org.bdgenomics.mango.cli.VizServlet.runRoutes(VizReads.scala:211)
    1 frame
  18. org.scalatra
    ScalatraBase$class.executeRoutes
    1. org.scalatra.ScalatraBase$class.runActions$1(ScalatraBase.scala:175)
    2. org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply$mcV$sp(ScalatraBase.scala:187)
    3. org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:187)
    4. org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:187)
    5. org.scalatra.ScalatraBase$class.org$scalatra$ScalatraBase$$cradleHalt(ScalatraBase.scala:205)
    6. org.scalatra.ScalatraBase$class.executeRoutes(ScalatraBase.scala:187)
    6 frames
  19. org.bdgenomics.mango
    VizServlet.executeRoutes
    1. org.bdgenomics.mango.cli.VizServlet.executeRoutes(VizReads.scala:211)
    1 frame
  20. org.scalatra
    ScalatraBase$$anonfun$handle$1.apply
    1. org.scalatra.ScalatraBase$$anonfun$handle$1.apply$mcV$sp(ScalatraBase.scala:126)
    2. org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:126)
    3. org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:126)
    3 frames
  21. Scala
    DynamicVariable.withValue
    1. scala.util.DynamicVariable.withValue(DynamicVariable.scala:57)
    1 frame
  22. org.scalatra
    DynamicScope$class.withResponse
    1. org.scalatra.DynamicScope$class.withResponse(DynamicScope.scala:78)
    1 frame
  23. org.bdgenomics.mango
    VizServlet.withResponse
    1. org.bdgenomics.mango.cli.VizServlet.withResponse(VizReads.scala:211)
    1 frame
  24. org.scalatra
    DynamicScope$$anonfun$withRequestResponse$1.apply
    1. org.scalatra.DynamicScope$$anonfun$withRequestResponse$1.apply(DynamicScope.scala:58)
    1 frame
  25. Scala
    DynamicVariable.withValue
    1. scala.util.DynamicVariable.withValue(DynamicVariable.scala:57)
    1 frame
  26. org.scalatra
    DynamicScope$class.withRequest
    1. org.scalatra.DynamicScope$class.withRequest(DynamicScope.scala:69)
    1 frame
  27. org.bdgenomics.mango
    VizServlet.withRequest
    1. org.bdgenomics.mango.cli.VizServlet.withRequest(VizReads.scala:211)
    1 frame
  28. org.scalatra
    DynamicScope$class.withRequestResponse
    1. org.scalatra.DynamicScope$class.withRequestResponse(DynamicScope.scala:57)
    1 frame
  29. org.bdgenomics.mango
    VizServlet.withRequestResponse
    1. org.bdgenomics.mango.cli.VizServlet.withRequestResponse(VizReads.scala:211)
    1 frame
  30. org.scalatra
    ScalatraBase$class.handle
    1. org.scalatra.ScalatraBase$class.handle(ScalatraBase.scala:125)
    1 frame
  31. org.bdgenomics.mango
    VizServlet.org$scalatra$servlet$ServletBase$$super$handle
    1. org.bdgenomics.mango.cli.VizServlet.org$scalatra$servlet$ServletBase$$super$handle(VizReads.scala:211)
    1 frame
  32. org.scalatra.servlet
    ServletBase$class.handle
    1. org.scalatra.servlet.ServletBase$class.handle(ServletBase.scala:53)
    1 frame
  33. org.bdgenomics.mango
    VizServlet.handle
    1. org.bdgenomics.mango.cli.VizServlet.handle(VizReads.scala:211)
    1 frame
  34. org.scalatra
    ScalatraServlet$class.service
    1. org.scalatra.ScalatraServlet$class.service(ScalatraServlet.scala:60)
    1 frame
  35. org.bdgenomics.mango
    VizServlet.service
    1. org.bdgenomics.mango.cli.VizServlet.service(VizReads.scala:211)
    1 frame
  36. JavaServlet
    HttpServlet.service
    1. javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
    1 frame
  37. Jetty
    AsyncHttpConnection.handle
    1. org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:565)
    2. org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:479)
    3. org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
    4. org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:521)
    5. org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:227)
    6. org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1031)
    7. org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:406)
    8. org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:186)
    9. org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:965)
    10. org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
    11. org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:250)
    12. org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:111)
    13. org.eclipse.jetty.server.Server.handle(Server.java:349)
    14. org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:449)
    15. org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.headerComplete(AbstractHttpConnection.java:910)
    16. org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:634)
    17. org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:230)
    18. org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:76)
    18 frames
  38. GWT dev
    SelectChannelEndPoint$1.run
    1. org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:609)
    2. org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:45)
    2 frames
  39. Jetty
    QueuedThreadPool$3.run
    1. org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:599)
    2. org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:534)
    2 frames
  40. Java RT
    Thread.run
    1. java.lang.Thread.run(Thread.java:745)
    1 frame