java.lang.IllegalStateException: A valid CRAM reference was not supplied and one cannot be acquired via the property settings reference_fasta or use_cram_ref_download

GitHub | s-andrews | 2 months ago
  1. 0

    Allow CRAM to be read if reference sequences are missing.

    GitHub | 2 months ago | s-andrews
    java.lang.IllegalStateException: A valid CRAM reference was not supplied and one cannot be acquired via the property settings reference_fasta or use_cram_ref_download
  2. 0

    Error when using HashMap.Entry inside sql mapping

    GitHub | 3 years ago | vf42
    java.lang.IllegalStateException: Type handler was null on parameter mapping for property '__frch_param_0.value'. It was either not specified and/or could not be found for the javaType / jdbcType combination specified.
  3. 0

    Specifying paramterMap for nested objects for Insert operation in ibatis Spring MVC

    Stack Overflow | 12 months ago | Rushikesh Khamborkar
    org.springframework.core.NestedIOException: Failed to parse mapping resource: 'file [D:\Java Spring WS\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\wtpwebapps\WebApp\WEB-INF\classes\main\java\com\pankanis\webapp\mappers\xml\Customer.xml]'; nested exception is java.lang.RuntimeException: Error parsing Mapper XML. Cause: java.lang.IllegalStateException: Type handler was null on parameter mapping for property 'customerAddress'. It was either not specified and/or could not be found for the javaType / jdbcType combination specified.
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  5. 0

    parameterType of list has throwing MyBatisSystemException.

    GitHub | 1 year ago | hubsn
    java.lang.IllegalStateException: Type handler was null on parameter mapping for property '__frch_element_0'. It was either not specified and/or could not be found for the javaType / jdbcType combination specified.
  6. 0

    How to generate IN operation in WHERE clause with org.apache.ibatis.jdbc.SQL

    Google Groups | 3 years ago | Palcsó Balázs
    java.lang.IllegalStateException: Type handler was null on parameter mapping for property 'includedCurrencyCodes[0]'. It was either not specified and/or could not be found for the javaType / jdbcType combination specified.

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    Root Cause Analysis

    1. java.lang.IllegalStateException

      A valid CRAM reference was not supplied and one cannot be acquired via the property settings reference_fasta or use_cram_ref_download

      at htsjdk.samtools.cram.ref.ReferenceSource.getDefaultCRAMReferenceSource()
    2. htsjdk.samtools.cram
      ReferenceSource.getDefaultCRAMReferenceSource
      1. htsjdk.samtools.cram.ref.ReferenceSource.getDefaultCRAMReferenceSource(ReferenceSource.java:108)
      1 frame
    3. HTS JDK
      SamReaderFactory$SamReaderFactoryImpl.open
      1. htsjdk.samtools.SamReaderFactory$SamReaderFactoryImpl.open(SamReaderFactory.java:301)
      2. htsjdk.samtools.SamReaderFactory$SamReaderFactoryImpl.open(SamReaderFactory.java:145)
      2 frames