java.io.FileNotFoundException: ../tt_decoy.psms (No such file or directory)

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Use the relative path when providing the location of the file. Place the file in the project folder and access it according to the hierarchy. If you want to access a file outside the project folder, provide the absolute path.

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java.io.FileNotFoundException: ../tt_decoy.psms (No such file or directory)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.(FileInputStream.java:146)
at java.io.FileReader.(FileReader.java:72)
at cli.Percolator2MascotDat.convert(Percolator2MascotDat.java:159)
at cli.MascotPercolator.mascot2percolator(MascotPercolator.java:327)
at cli.MascotPercolator.main(MascotPercolator.java:146)

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