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via GitHub by szilvajuhos
, 1 year ago
Cannot add sequence that already exists in SAMSequenceDictionary: 1
via GitHub by tiramisutes
, 4 weeks ago
Cannot add sequence that already exists in SAMSequenceDictionary: m160724_231041_42278_c100905242550000001823198804291694_s1_X0/56082/11510_49152
java.lang.IllegalArgumentException: Cannot add sequence that already exists in SAMSequenceDictionary: 1	at htsjdk.samtools.SAMSequenceDictionary.setSequences(SAMSequenceDictionary.java:68)	at htsjdk.samtools.SAMSequenceDictionary.(SAMSequenceDictionary.java:45)	at htsjdk.samtools.SAMTextHeaderCodec.decode(SAMTextHeaderCodec.java:113)	at htsjdk.samtools.BAMFileReader.readHeader(BAMFileReader.java:502)	at htsjdk.samtools.BAMFileReader.(BAMFileReader.java:165)	at htsjdk.samtools.BAMFileReader.(BAMFileReader.java:124)	at htsjdk.samtools.SAMFileReader.init(SAMFileReader.java:689)	at htsjdk.samtools.SAMFileReader.(SAMFileReader.java:201)	at htsjdk.samtools.SAMFileReader.(SAMFileReader.java:156)	at picard.sam.MarkDuplicates.openInputs(MarkDuplicates.java:355)	at picard.sam.MarkDuplicates.buildSortedReadEndLists(MarkDuplicates.java:405)	at picard.sam.MarkDuplicates.doWork(MarkDuplicates.java:177)	at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:183)	at picard.sam.MarkDuplicates.main(MarkDuplicates.java:161)