java.io.IOException: error=2, No such file or directory

Google Groups | Unknown author | 4 years ago
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    InterProScan RC6 : Running on SGE clusters fails

    Google Groups | 4 years ago | Unknown author
    java.io.IOException: error=2, No such file or directory
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    Running on an SGE cluster --> Cannot run program "bjobs"

    Google Groups | 4 years ago | Unknown author
    java.io.IOException: error=2, No such file or directory
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    hadoop streaming failed with error code 1

    Google Groups | 3 years ago | Ved J.
    java.io.IOException: error=2, No such file or directory
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    rmr2 failed because Rscript error

    GitHub | 4 years ago | zhanxw
    java.lang.RuntimeException: Error in configuring object
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    rmr2 failed - Rscript error

    GitHub | 4 years ago | zhanxw
    java.lang.RuntimeException: Error in configuring object

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Root Cause Analysis

  1. java.io.IOException

    java.io.IOException: error=2, No such file or directory

    at java.lang.UNIXProcess.<init>()
  2. Java RT
    ProcessBuilder.start
    1. java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
    2. java.lang.ProcessImpl.start(ProcessImpl.java:65)
    3. java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
    3 frames
  3. uk.ac.ebi
    Run.main
    1. uk.ac.ebi.interpro.scan.io.cli.CommandLineConversationImpl.runCommand(CommandLineConversationImpl.java:102)
    2. uk.ac.ebi.interpro.scan.io.cli.CommandLineConversationImpl.runCommand(CommandLineConversationImpl.java:60)
    3. uk.ac.ebi.interpro.scan.jms.master.queuejumper.platforms.SubmissionWorkerRunner.startupNewWorker(SubmissionWorkerRunner.java:252)
    4. uk.ac.ebi.interpro.scan.jms.master.DistributedBlackBoxMasterCopy.startNewWorker(DistributedBlackBoxMasterCopy.java:209)
    5. uk.ac.ebi.interpro.scan.jms.master.DistributedBlackBoxMasterCopy.run(DistributedBlackBoxMasterCopy.java:61)
    6. uk.ac.ebi.interpro.scan.jms.main.Run.main(Run.java:433)
    6 frames