org.springframework.oxm.UnmarshallingFailureException: JAXB unmarshalling exception; nested exception is javax.xml.bind.UnmarshalException: unexpected element (uri:"", local:"html"). Expected elements are <{}berkeleyMatchXML>

Google Groups | Unknown author | 5 years ago
  1. 0

    not working

    Google Groups | 5 years ago | Unknown author
    org.springframework.oxm.UnmarshallingFailureException: JAXB unmarshalling exception; nested exception is javax.xml.bind.UnmarshalException: unexpected element (uri:"", local:"html"). Expected elements are <{}berkeleyMatchXML>
  2. 0

    Error in RemoteScopInstallation

    GitHub | 3 years ago | sbliven
    javax.xml.bind.UnmarshalException: unexpected element (uri:"http://source.rcsb.org", local:"ScopNode"). Expected elements are <{http://source.rcsb.org}ScopDescription>
  3. 0

    javax.xml.bind.UnmarshalException PasswordResponse

    Stack Overflow | 2 years ago | user2863034
    javax.xml.bind.UnmarshalException: unexpected element (uri:"PasswordResponse", local:"PasswordResponse"). Expected elements are &lt;{}PasswordResponse&gt;
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  5. 0

    JAXB Umarshaller error

    Stack Overflow | 3 years ago | Artem Moskalev
    javax.xml.bind.UnmarshalException: unexpected element (uri:"", local:"ONIXMessage"). Expected elements are &lt;{http://ns.editeur.org/onix/3.0/reference}Addressee&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AddresseeIDType&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AddresseeIdentifier&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AddresseeName&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}Affiliation&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AgentIDType&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AgentIdentifier&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AgentName&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AgentRole&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AlternativeName&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AncillaryContent&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AncillaryContentDescription&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AncillaryContentType&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}Audience&gt;,&lt;{http://ns.editeur.org/onix/3.0/reference}AudienceCode&gt; ...
  6. 0

    Unmarshall xml to list of objects

    Stack Overflow | 4 years ago | Lory Lory
    javax.xml.bind.UnmarshalException: unexpected element (uri:"", local:"customers"). Expected elements are &lt;{}customer&gt;,&lt;{}user&gt;

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Root Cause Analysis

  1. javax.xml.bind.UnmarshalException

    unexpected element (uri:"", local:"html"). Expected elements are <{}berkeleyMatchXML>

    at com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallingContext.handleEvent()
  2. Java RT
    AbstractUnmarshallerImpl.unmarshal
    1. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallingContext.handleEvent(UnmarshallingContext.java:631)
    2. com.sun.xml.internal.bind.v2.runtime.unmarshaller.Loader.reportError(Loader.java:236)
    3. com.sun.xml.internal.bind.v2.runtime.unmarshaller.Loader.reportError(Loader.java:231)
    4. com.sun.xml.internal.bind.v2.runtime.unmarshaller.Loader.reportUnexpectedChildElement(Loader.java:105)
    5. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallingContext$DefaultRootLoader.childElement(UnmarshallingContext.java:1038)
    6. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallingContext._startElement(UnmarshallingContext.java:467)
    7. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallingContext.startElement(UnmarshallingContext.java:448)
    8. com.sun.xml.internal.bind.v2.runtime.unmarshaller.SAXConnector.startElement(SAXConnector.java:137)
    9. com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:501)
    10. com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:400)
    11. com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl$NSContentDriver.scanRootElementHook(XMLNSDocumentScannerImpl.java:626)
    12. com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:3103)
    13. com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(XMLDocumentScannerImpl.java:922)
    14. com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648)
    15. com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:140)
    16. com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:511)
    17. com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:808)
    18. com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)
    19. com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:119)
    20. com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)
    21. com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
    22. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallerImpl.unmarshal0(UnmarshallerImpl.java:200)
    23. com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallerImpl.unmarshal(UnmarshallerImpl.java:173)
    24. javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:137)
    25. javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:105)
    25 frames
  3. Spring Object/XML Marshalling
    Jaxb2Marshaller.unmarshal
    1. org.springframework.oxm.jaxb.Jaxb2Marshaller.unmarshal(Jaxb2Marshaller.java:581)
    2. org.springframework.oxm.jaxb.Jaxb2Marshaller.unmarshal(Jaxb2Marshaller.java:568)
    2 frames
  4. uk.ac.ebi
    MatchHttpClient$1.handleResponse
    1. uk.ac.ebi.interpro.scan.precalc.client.MatchHttpClient$1.handleResponse(MatchHttpClient.java:93)
    2. uk.ac.ebi.interpro.scan.precalc.client.MatchHttpClient$1.handleResponse(MatchHttpClient.java:83)
    2 frames
  5. Apache HttpClient
    AbstractHttpClient.execute
    1. org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:945)
    2. org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:919)
    3. org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:910)
    3 frames
  6. uk.ac.ebi
    LoadFastaFileImpl.loadSequences
    1. uk.ac.ebi.interpro.scan.precalc.client.MatchHttpClient.getMatches(MatchHttpClient.java:103)
    2. uk.ac.ebi.interpro.scan.business.sequence.BerkeleyPrecalculatedProteinLookup.getPrecalculated(BerkeleyPrecalculatedProteinLookup.java:152)
    3. uk.ac.ebi.interpro.scan.business.sequence.ProteinLoader.lookupProteins(ProteinLoader.java:123)
    4. uk.ac.ebi.interpro.scan.business.sequence.ProteinLoader.persist(ProteinLoader.java:191)
    5. uk.ac.ebi.interpro.scan.business.sequence.fasta.LoadFastaFileImpl.loadSequences(LoadFastaFileImpl.java:97)
    5 frames
  7. Java RT
    Method.invoke
    1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
    3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    4. java.lang.reflect.Method.invoke(Method.java:597)
    4 frames
  8. Spring AOP
    ReflectiveMethodInvocation.proceed
    1. org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
    2. org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
    3. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
    3 frames
  9. Spring Tx
    TransactionInterceptor.invoke
    1. org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
    1 frame
  10. Spring AOP
    JdkDynamicAopProxy.invoke
    1. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    2. org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
    2 frames
  11. Unknown
    $Proxy74.loadSequences
    1. $Proxy74.loadSequences(Unknown Source)
    1 frame
  12. uk.ac.ebi
    StepExecutionTransactionImpl.executeInTransaction
    1. uk.ac.ebi.interpro.scan.management.model.implementations.stepInstanceCreation.proteinLoad.FastaFileLoadStep.execute(FastaFileLoadStep.java:126)
    2. uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:83)
    2 frames
  13. Java RT
    Method.invoke
    1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
    3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    4. java.lang.reflect.Method.invoke(Method.java:597)
    4 frames
  14. Spring AOP
    ReflectiveMethodInvocation.proceed
    1. org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309)
    2. org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
    3. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
    3 frames
  15. Spring Tx
    TransactionInterceptor.invoke
    1. org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
    1 frame
  16. Spring AOP
    JdkDynamicAopProxy.invoke
    1. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    2. org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
    2 frames
  17. Unknown
    $Proxy78.executeInTransaction
    1. $Proxy78.executeInTransaction(Unknown Source)
    1 frame
  18. uk.ac.ebi
    AmqInterProScanWorker.onMessage
    1. uk.ac.ebi.interpro.scan.jms.activemq.AmqInterProScanWorker.onMessage(AmqInterProScanWorker.java:96)
    1 frame
  19. Spring Framework
    DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run
    1. org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:560)
    2. org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:498)
    3. org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:467)
    4. org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:325)
    5. org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:263)
    6. org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1058)
    7. org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1050)
    8. org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:947)
    8 frames
  20. Java RT
    Thread.run
    1. java.lang.Thread.run(Thread.java:662)
    1 frame