java.lang.IllegalStateException: java.lang.StringIndexOutOfBoundsException: String index out of range: 2 at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.buildEngine(BuilderFromVCF.java:215) at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.build(BuilderFromVCF.java:114)

Google Groups | Alexander Berry | 5 months ago
  1. 0

    String index out of range: 2

    Google Groups | 5 months ago | Alexander Berry
    java.lang.IllegalStateException: java.lang.StringIndexOutOfBoundsException: String index out of range: 2 at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.buildEngine(BuilderFromVCF.java:215) at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.build(BuilderFromVCF.java:114)
  2. 0

    VCF file load problem

    Google Groups | 2 years ago | Ruijuan li
    java.lang.IllegalStateException: java.lang.ArrayIndexOutOfBoundsException
  3. 0
    Update to Grails 3.0.x
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  5. 0
    Upgrade sbt-dependency-graph to 0.8.2 or later.
  6. 0
    Execute mvn dependency:tree from your project's root directory.

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    Root Cause Analysis

    1. java.lang.IllegalStateException

      java.lang.StringIndexOutOfBoundsException: String index out of range: 2 at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.buildEngine(BuilderFromVCF.java:215) at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.build(BuilderFromVCF.java:114)

      at net.maizegenetics.dna.snp.ImportUtils.readFromVCF()
    2. net.maizegenetics.dna
      ImportUtils.readFromVCF
      1. net.maizegenetics.dna.snp.ImportUtils.readFromVCF(ImportUtils.java:110)
      2. net.maizegenetics.dna.snp.ImportUtils.readFromVCF(ImportUtils.java:116)
      2 frames
    3. net.maizegenetics.analysis
      FileLoadPlugin.performFunction
      1. net.maizegenetics.analysis.data.FileLoadPlugin.processDatum(FileLoadPlugin.java:465)
      2. net.maizegenetics.analysis.data.FileLoadPlugin.performFunction(FileLoadPlugin.java:249)
      2 frames
    4. net.maizegenetics.plugindef
      ThreadedPluginListener.run
      1. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1652)
      2. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)[Thread-7]
      2 frames