java.lang.NoClassDefFoundError: org/bdgenomics/utils/misc/HadoopUtil$

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    java.lang.NoClassDefFoundError: org/bdgenomics/utils/misc/HadoopUtil$
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Root Cause Analysis

  1. java.lang.ClassNotFoundException

    org.bdgenomics.utils.misc. HadoopUtil$

    at java.net.URLClassLoader$1.run()
  2. Java RT
    ClassLoader.loadClass
    1. java.net.URLClassLoader$1.run(URLClassLoader.java:366)
    2. java.net.URLClassLoader$1.run(URLClassLoader.java:355)
    3. java.security.AccessController.doPrivileged(Native Method)
    4. java.net.URLClassLoader.findClass(URLClassLoader.java:354)
    5. java.lang.ClassLoader.loadClass(ClassLoader.java:425)
    6. java.lang.ClassLoader.loadClass(ClassLoader.java:358)
    6 frames
  3. org.bdgenomics.adam
    ADAMContext.loadGenotypes
    1. org.bdgenomics.adam.rdd.ADAMContext.loadVcf(ADAMContext.scala:584)
    2. org.bdgenomics.adam.rdd.ADAMContext.loadGenotypes(ADAMContext.scala:800)
    2 frames
  4. yelp
    genome.main
    1. yelp.genome$.main(genome.scala:32)
    2. yelp.genome.main(genome.scala)
    2 frames
  5. Java RT
    Method.invoke
    1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    4. java.lang.reflect.Method.invoke(Method.java:606)
    4 frames
  6. Spark
    SparkSubmit.main
    1. org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
    2. org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
    3. org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
    4. org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
    5. org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
    5 frames