java.lang.ArrayStoreException: org.apache.avro.generic.GenericData$Record

Google Groups | Unknown author | 10 months ago
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    Google Groups | 10 months ago | Unknown author
    java.lang.ArrayStoreException: org.apache.avro.generic.GenericData$Record
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    java.lang.ArrayStoreException: org.bdgenomics.formats.avro.Genotype
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    Root Cause Analysis

    1. java.lang.ArrayStoreException

      org.apache.avro.generic.GenericData$Record

      at scala.runtime.ScalaRunTime$.array_update()
    2. Scala
      AbstractIterator.toArray
      1. scala.runtime.ScalaRunTime$.array_update(ScalaRunTime.scala:88)
      2. scala.Array$.slowcopy(Array.scala:81)
      3. scala.Array$.copy(Array.scala:107)
      4. scala.collection.mutable.ResizableArray$class.copyToArray(ResizableArray.scala:77)
      5. scala.collection.mutable.ArrayBuffer.copyToArray(ArrayBuffer.scala:47)
      6. scala.collection.TraversableOnce$class.copyToArray(TraversableOnce.scala:241)
      7. scala.collection.AbstractTraversable.copyToArray(Traversable.scala:105)
      8. scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:249)
      9. scala.collection.AbstractTraversable.toArray(Traversable.scala:105)
      10. scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252)
      11. scala.collection.AbstractIterator.toArray(Iterator.scala:1157)
      11 frames
    3. Spark
      Executor$TaskRunner.run
      1. org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$28.apply(RDD.scala:1328)
      2. org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$28.apply(RDD.scala:1328)
      3. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
      4. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
      5. org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
      6. org.apache.spark.scheduler.Task.run(Task.scala:89)
      7. org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
      7 frames
    4. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames