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via Google Groups by someya sayeh, 1 year ago
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org.bdgenomics.formats.avro.Genotype: 	at org.bdgenomics.adam.rdd.variation.GenotypeRDDFunctions$$anonfun$10.apply(VariationRDDFunctions.scala:153)	at org.apache.spark.rdd.RDD$$anonfun$keyBy$1.apply(RDD.scala:1324)	at org.apache.spark.rdd.RDD$$anonfun$keyBy$1.apply(RDD.scala:1324)	at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)	at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)	at org.apache.spark.util.collection.ExternalSorter.spillToPartitionFiles(ExternalSorter.scala:371)	at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:211)	at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:63)	at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:68)	at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)	at org.apache.spark.scheduler.Task.run(Task.scala:64)	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203)	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)	at java.lang.Thread.run(Thread.java:745)