Cannot encode phred score: 243

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Solutions on the web4069

  • via Google Groups by Sungwook Yoon, 6 months ago
    Cannot encode phred score: 243
  • via GitHub by wichne
    , 2 months ago
    Cannot score V, O
  • Cannot score R, ?
  • Stack trace

    • java.lang.IllegalArgumentException: Cannot encode phred score: 243 at htsjdk.samtools.SAMUtils.phredToFastq( at htsjdk.samtools.SAMUtils.phredToFastq( at htsjdk.samtools.SAMUtils.phredToFastq( at htsjdk.samtools.SAMRecord.getBaseQualityString( at org.bdgenomics.adam.converters.SAMRecordConverter.convert(SAMRecordConverter.scala:68) at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadBam$1.apply(ADAMContext.scala:263) at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadBam$1.apply(ADAMContext.scala:263) at scala.collection.Iterator$$anon$ at scala.collection.Iterator$$anon$ at org.apache.spark.rdd.PairRDDFunctions$$anonfun$12.apply(PairRDDFunctions.scala:992) at org.apache.spark.rdd.PairRDDFunctions$$anonfun$12.apply(PairRDDFunctions.scala:969) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:61) at at org.apache.spark.executor.Executor$ at java.util.concurrent.ThreadPoolExecutor.runWorker( at java.util.concurrent.ThreadPoolExecutor$ at

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