java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream' java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream

JIRA | Nidhi Mehta | 2 years ago
  1. 0

    data file on - 172.16.2.184/home/nidhi/train_rev2.gz while parsing get Got exception 'class java.lang.RuntimeException', with msg 'water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream' java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream at water.MRTask.getResult(MRTask.java:489) at water.MRTask.doAll(MRTask.java:400) at water.parser.ParseDataset.parseAllKeys(ParseDataset.java:197) at water.parser.ParseDataset.access$100(ParseDataset.java:25) at water.parser.ParseDataset$ParserFJTask.compute2(ParseDataset.java:156) at water.H2O$H2OCountedCompleter.compute(H2O.java:698) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) Caused by: water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream at water.parser.Parser$StreamData.getChunkData(Parser.java:131) at water.parser.CsvParser.parseChunk(CsvParser.java:413) at water.parser.Parser.streamParseZip(Parser.java:96) at water.parser.ParseDataset$MultiFileParseTask.streamParse(ParseDataset.java:655) at water.parser.ParseDataset$MultiFileParseTask.map(ParseDataset.java:614) at water.MRTask.compute2(MRTask.java:608) ... 6 more Caused by: water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240) at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158) at java.util.zip.GZIPInputStream.read(GZIPInputStream.java:116) at water.parser.Parser$StreamData.getChunkData(Parser.java:125) ... 11 more

    JIRA | 2 years ago | Nidhi Mehta
    java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream' java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.lang.RuntimeException: java.io.EOFException: Unexpected end of ZLIB input stream
  2. 0

    This was on a 8-node EC2 cluster: Might be related to PUBDEV-1091. parseFiles paths: ["/home/ec2-user/./bigdata/laptop/HIGGS.csv.gz"] destination_frame: "HIGGS.hex" parse_type: "CSV" separator: 44 number_columns: 29 single_quotes: false column_types: ["Enum","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric","Numeric"] delete_on_done: true check_header: -1 chunk_size: 4194304 Got exception 'class java.lang.RuntimeException', with msg 'water.DException$DistributedException: from /10.10.0.18:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.13:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.14:54321; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream' java.lang.RuntimeException: water.DException$DistributedException: from /10.10.0.18:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.13:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.14:54321; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream at water.MRTask.getResult(MRTask.java:265) at water.MRTask.doAll(MRTask.java:295) at water.parser.ParseDataset.parseAllKeys(ParseDataset.java:174) at water.parser.ParseDataset.access$100(ParseDataset.java:25) at water.parser.ParseDataset$ParserFJTask.compute2(ParseDataset.java:139) at water.H2O$H2OCountedCompleter.compute(H2O.java:682) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) Caused by: water.DException$DistributedException: from /10.10.0.18:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.13:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.14:54321; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240) at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158) at java.util.zip.GZIPInputStream.read(GZIPInputStream.java:116) at water.parser.Parser$StreamData.getChunkData(Parser.java:125) at water.parser.CsvParser.parseChunk(CsvParser.java:413) at water.parser.Parser.streamParseZip(Parser.java:96) at water.parser.ParseDataset$MultiFileParseTask.streamParse(ParseDataset.java:627) at water.parser.ParseDataset$MultiFileParseTask.map(ParseDataset.java:586) at water.MRTask.compute2(MRTask.java:383) ... 6 more

    JIRA | 2 years ago | Arno Candel
    java.io.EOFException: Unexpected end of ZLIB input stream' java.lang.RuntimeException: water.DException$DistributedException: from /10.10.0.18:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.13:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.10.0.14:54321; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream
  3. 0

    H2O Documentation

    amazonaws.com | 1 year ago
    water.DException$DistributedException: from /10.23.36.177:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.23.36.177:54325; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.23.36.178:54325; by class water.parser.ParseDataset$MultiFileParseTask$DistributedParse; class java.lang.NullPointerException: null
  4. Speed up your debug routine!

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  5. 0

    H2O Documentation

    amazonaws.com | 10 months ago
    water.DException$DistributedException: from /10.23.36.177:54321; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.23.36.177:54325; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /10.23.36.178:54325; by class water.parser.ParseDataset$MultiFileParseTask$DistributedParse; class java.lang.NullPointerException: null
  6. 0

    Steps to reproduce : 1) Start h2o on hadoop:(rel-severi-11) h2o-dev-builds/h2o-dev-0.2.2.11-hdp2.1$ hadoop jar h2odriver.jar -nodes 4 -mapperXmx 40g -output April-20-1 -baseport 55555 -flow_dir hdfs:///user/neeraja/myflow-1 2) importFiles [ "https://s3.amazonaws.com/h2o-public-test-data/bigdata/laptop/covtype/covtype.data" ] 3) Parse Fails with error below : Got exception 'class java.lang.RuntimeException', with msg 'water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null' java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null at water.MRTask.getResult(MRTask.java:265) at water.MRTask.doAll(MRTask.java:295) at water.parser.ParseDataset.parseAllKeys(ParseDataset.java:175) at water.parser.ParseDataset.access$100(ParseDataset.java:26) at water.parser.ParseDataset$ParserFJTask.compute2(ParseDataset.java:140) at water.H2O$H2OCountedCompleter.compute(H2O.java:682) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) Caused by: water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null at water.fvec.Vec.chunkForChunkIdx(Vec.java:734) at water.fvec.ByteVec.chunkForChunkIdx(ByteVec.java:16) at water.fvec.ByteVec.chunkForChunkIdx(ByteVec.java:12) at water.MRTask.compute2(MRTask.java:399) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.H2O$H2OCountedCompleter.compute(H2O.java:682) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.pollAndExecAll(ForkJoinPool.java:914) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:979) ... 2 more Error: Got exception 'class java.lang.RuntimeException', with msg 'water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null' java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null at water.MRTask.getResult(MRTask.java:265) at water.MRTask.doAll(MRTask.java:295) at water.parser.ParseDataset.parseAllKeys(ParseDataset.java:175) at water.parser.ParseDataset.access$100(ParseDataset.java:26) at water.parser.ParseDataset$ParserFJTask.compute2(ParseDataset.java:140) at water.H2O$H2OCountedCompleter.compute(H2O.java:682) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) Caused by: water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null at water.fvec.Vec.chunkForChunkIdx(Vec.java:734) at water.fvec.ByteVec.chunkForChunkIdx(ByteVec.java:16) at water.fvec.ByteVec.chunkForChunkIdx(ByteVec.java:12) at water.MRTask.compute2(MRTask.java:399) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.MRTask.compute2(MRTask.java:374) at water.H2O$H2OCountedCompleter.compute(H2O.java:682) at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) at jsr166y.ForkJoinPool$WorkQueue.pollAndExecAll(ForkJoinPool.java:914) at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:979) ... 2 more at updateJob (http://172.16.2.189:55555/flow/js/flow.js:7945:87) at http://172.16.2.189:55555/flow/js/flow.js:7957:21 at http://172.16.2.189:55555/flow/js/flow.js:4424:28 at Object.<anonymous> (http://172.16.2.189:55555/flow/js/flow.js:4224:28) at fire (http://172.16.2.189:55555/flow/js/flow-lib.js:3852:30) at Object.self.fireWith [as resolveWith] (http://172.16.2.189:55555/flow/js/flow-lib.js:3964:7) at done (http://172.16.2.189:55555/flow/js/flow-lib.js:9017:14) at XMLHttpRequest.<anonymous> (http://172.16.2.189:55555/flow/js/flow-lib.js:9358:9)

    JIRA | 2 years ago | Neeraja Madabhushi
    java.lang.RuntimeException: water.DException$DistributedException: from /172.16.2.189:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.181:55555; by class water.parser.ParseDataset$MultiFileParseTask; class water.DException$DistributedException: from /172.16.2.183:55555; by class water.parser.ParseDataset$MultiFileParseTask$DParse; class java.lang.NullPointerException: null

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    Root Cause Analysis

    1. water.DException$DistributedException

      from /172.16.2.184:44545; by class water.parser.ParseDataset$MultiFileParseTask; class java.io.EOFException: Unexpected end of ZLIB input stream

      at java.util.zip.InflaterInputStream.fill()
    2. Java RT
      GZIPInputStream.read
      1. java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240)
      2. java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158)
      3. java.util.zip.GZIPInputStream.read(GZIPInputStream.java:116)
      3 frames
    3. water.parser
      ParseDataset$MultiFileParseTask.map
      1. water.parser.Parser$StreamData.getChunkData(Parser.java:125)
      2. water.parser.CsvParser.parseChunk(CsvParser.java:413)
      3. water.parser.Parser.streamParseZip(Parser.java:96)
      4. water.parser.ParseDataset$MultiFileParseTask.streamParse(ParseDataset.java:655)
      5. water.parser.ParseDataset$MultiFileParseTask.map(ParseDataset.java:614)
      5 frames
    4. water
      H2O$H2OCountedCompleter.compute
      1. water.MRTask.compute2(MRTask.java:608)
      2. water.H2O$H2OCountedCompleter.compute(H2O.java:698)
      2 frames
    5. jsr166y
      ForkJoinWorkerThread.run
      1. jsr166y.CountedCompleter.exec(CountedCompleter.java:429)
      2. jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263)
      3. jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974)
      4. jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477)
      5. jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104)
      5 frames